Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0534 ATGGAACAACAAAGGCATGGCTATTTTCGTTCTGATCCGGGTATCCCTTCCAGAGGCACCAATATCTCTACACCTAATATCCACATAGTGACAACATCTTCAGGGAACACAACTAATCTCAACTCCCATTTTTTACCAGATATGTATGACAATGTAATGATGAATGGGGTGACACAATACACTGGCATTCAGAATCAACATAATCTTGATATGGATATTCCAGCTGCTGCCAACTTATATTATTCTAGAATGAATCCTTCATCTAGCTCTGGTGTATTACATCTGCCTCTAAACCACACTGCATCTGATCAGTTATATGGTTCAAGCACATCTGCAGTATCTGGAGCATACAAAAGGAAAACTGCTGGAAGGATAAGAGGAAATTATCAGCACTTCAATGCCTCAACCAGTTCTTCAGTTGCTTCACCCAATGCTAGATACAGTGATGGGGATGGTATGATGGATATTGCACCATTTCCAATGCCTCAGTATAGAGGAAGTAGCATCCCTCCACTTGTGGATGTTGGAGCAAATGGTAGTTCCTGGAGCGGATCAGGTGAGTCTAATATGGTACATGACAATAACCATTTGATTCGAGGAAACTATTTAGGACAGCACTTTCAGCCAGCTGCTCCTCCCTGGCGGGACCAGCAATTGAACTGTAATATTAATGACGGTCATGCTGCAGCCTGGAATCTGTTTCTTCCAATGCCTTATACACAAGCTGTTGATGCTAATGGAAGTTCATTAGAGGATGCAAGTATGGGTCTGCAGATGCATCCTGATACAGCTCGAAACAGAAATGGCTTCAGGTTTCCCCATCCTCCTCCTGTCATCCCCCAGCACCATAACTTTCATCATCCAACACCTCCTATGCAAGGAATGAGAGGTCACTCCATCAGATTTCATCCTACTGCAGTTTCATATAGGTTTCCAACAAATCCTTCACACAGTGCTGCAATCCCGCGAAATGATTTTGAGATGGGTGCTAGGCATGTTGAGACTGCACCATCTGCAGGTCTACACAGATACCGACCTCATAGAGAAGCCGTGCCTGAGGCAACTTTAGGACATCAAAATCTTTCTCCTATGCGCTTCGTCCAAGTTGATGAGCTTCTTGCGTTGGGCGAGCGGATTGGCAATGTAAGCACGGGTTTATCAGAGGAAATGATTACAAAGCAAATGAGGATAAAGACTTATTTAGTACCTGCAATTGCTATTAATTTGGAGGTTGCTTATGAGGAACAGGAAACTGATTCTTGCACAATATGCCTGGATGAATATCAGAACCAGGAGAAAATTGGGATTCTACAATGCGGACATGAGTATCATGCCGATTGTTTAAGGAAATGGTTGCTTGTGAAAAATGTGTGCCCCATATGCAAATCAGAAGGATTGACTCCCGGAGGGAATGGTGTATAA 1422 0.4325 MEQQRHGYFRSDPGIPSRGTNISTPNIHIVTTSSGNTTNLNSHFLPDMYDNVMMNGVTQYTGIQNQHNLDMDIPAAANLYYSRMNPSSSSGVLHLPLNHTASDQLYGSSTSAVSGAYKRKTAGRIRGNYQHFNASTSSSVASPNARYSDGDGMMDIAPFPMPQYRGSSIPPLVDVGANGSSWSGSGESNMVHDNNHLIRGNYLGQHFQPAAPPWRDQQLNCNINDGHAAAWNLFLPMPYTQAVDANGSSLEDASMGLQMHPDTARNRNGFRFPHPPPVIPQHHNFHHPTPPMQGMRGHSIRFHPTAVSYRFPTNPSHSAAIPRNDFEMGARHVETAPSAGLHRYRPHREAVPEATLGHQNLSPMRFVQVDELLALGERIGNVSTGLSEEMITKQMRIKTYLVPAIAINLEVAYEEQETDSCTICLDEYQNQEKIGILQCGHEYHADCLRKWLLVKNVCPICKSEGLTPGGNGV 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0534 473 ProSiteProfiles Zinc finger RING-type profile. 421 462 IPR001841 -
Lal9g0534 473 SMART ring_2 421 461 IPR001841 -
Lal9g0534 473 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 370 470 IPR045191 GO:0061630
Lal9g0534 473 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 114 371 IPR045191 GO:0061630
Lal9g0534 473 SUPERFAMILY RING/U-box 413 465 - -
Lal9g0534 473 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 114 371 - -
Lal9g0534 473 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 370 470 - -
Lal9g0534 473 Pfam Ring finger domain 419 462 IPR001841 -
Lal9g0534 473 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 402 465 IPR013083 -
Lal9g0534 473 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0534 Lal-Chr9 3585730 3590806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0534 370 466 C3H Transcription Factor Family AT2G15530 48.454 2.26e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0534 K19041 - gmx:100808448 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0534 9 3585730 3590806 Lal9g0534 9 3585730 3590806 ECH