Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0526 ATGGCTCCAAAAGAAAAAGGATCGGATCTCTCTGGATCAAACCCGACCCAGTTGTCCACCAAAGAGATCCGATATAGAGGAGTCAGAAAGAGACCTTGGGGCCGTTACGCTGCTGAAATCCGCGACCCTGGCAAGAAAACACGTGTTTGGCTCGGCACCTTTGACACCGCTGAAGAAGCTGCGCGAGCCTATGATAAGGCGGCGCGTGAGTTTCGTGGTTCAAAGGCCAAAATTAATTTCCCCACCGCTTCTGAGCTTATTAACCTCTCCGCGCGTAGTCCTTGTCAGAGCAGCACCGTTGAATCCTCTTCTCCTCCGCCGTTGGATATCACTATCTCCCCACACTCTCTCGAAGGTTCGTTCGGATTCCCGGTAACTCGTCCGGTGTTGTTCTTCGATGTTTTTGCAAGAACTGAGACGCGCGTGTTCGATCGTCCGGTTCCTGATATTATCCATGGCTTCTGCGGCGGAGCTAATAGTGACTCCGTTTCATCCGCCGTCGTTGATAGGGTTCCACATCGGAGAATGTTAGATCTTGACCTTAACTTCCCTCCACCACCGGAGGTTGCTTGA 573 0.5201 MAPKEKGSDLSGSNPTQLSTKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDKAAREFRGSKAKINFPTASELINLSARSPCQSSTVESSSPPPLDITISPHSLEGSFGFPVTRPVLFFDVFARTETRVFDRPVPDIIHGFCGGANSDSVSSAVVDRVPHRRMLDLDLNFPPPPEVA 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0526 190 MobiDBLite consensus disorder prediction 1 24 - -
Lal9g0526 190 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 10 169 - -
Lal9g0526 190 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Lal9g0526 190 CDD AP2 24 83 IPR001471 GO:0003700|GO:0006355
Lal9g0526 190 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 10 169 - -
Lal9g0526 190 Gene3D AP2/ERF domain 23 83 IPR036955 GO:0003700|GO:0006355
Lal9g0526 190 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Lal9g0526 190 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Lal9g0526 190 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Lal9g0526 190 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Lal9g0526 190 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0526 Lal-Chr9 3521335 3521907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0526 9 136 AP2-EREBP Transcription Factor Family AT3G15210 55.102 7.01e-48 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal9g0526 AP2 2.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0526 K09286 - gmx:100786709 218.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0526 9 3521335 3521907 Lal5g1719 5 19315325 19315897 ECH
Lal9g0526 9 3521335 3521907 Lal11g0203 11 1451601 1452254 ECH
Lal9g0526 9 3521335 3521907 Lal9g0526 9 3521335 3521907 ECH