Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0514 TCTATCTTTGATAAACATGCAAAGGAACACGGTGATGATGAAGAAGGCGAGGATAATAGCAAAGGAAACAATGGTAGAGAAAACATAGATGTACGTGAAGGTTATTTTGCTGTGGAAGAAAACTCAATGGAATCCACATGCTCTGACTCTACTGGAGGAGTCTCACCAGAGAAAAAAATGAAATTTACTTCAGCGGTTCCAACAGTTTCTAGTAATGATGACGGTTGCTTTGATTGCAATATCTGCTTGGAATCAGCTCATGAACCTGTGGTTACTCTCTGCGGTCACCTGTACTGTTGGCCATGCATATATAAATGGATTCATGTACAAAGCTCTTCTGTTGAACCAGATCAGCAGCAGACATGTCCAGTTTGTAAAGCGGAGATCTCAGATGCTTCACTAGTCCCACTTTATGGCCGTGGAACATCTAATTCAGAATCTGATGAAGCCAAGAAACTCCAGATGGGTCTAGGAATACCACATAGGCCACCTCCTTACAACTTGAATGCTACGTTAGCTTCTACTCGTGCATCACCAACTTCACATCCCACTCAGCAACTTCATCCAAGTTATTTCCAGTCACAACCGCGACCAATTCATTATCAACAATACTTTCCTCACATGTATGGAGGTTATGGCACCAATGGATTACCTTATCTTGGAGGAGCTGCTATGACTAGTTTTTTCAATCCAATGATTGGTATGTTTGGGGATATGGTTTTGACAAGGATTTTTGGGGTTTCAGATGCAAATTTGTTCCCTTACCCTCACAGTGGAAGTGGCAGTCCTACTAGGATTAGAAGGCAGGAGATCCAAATTGACAAGTCTCTGAACAGGGTTTCTATCTTTCTTCTCTGTTGCATCATATTATGTCTTCTCTTATTTTGA 888 0.4144 SIFDKHAKEHGDDEEGEDNSKGNNGRENIDVREGYFAVEENSMESTCSDSTGGVSPEKKMKFTSAVPTVSSNDDGCFDCNICLESAHEPVVTLCGHLYCWPCIYKWIHVQSSSVEPDQQQTCPVCKAEISDASLVPLYGRGTSNSESDEAKKLQMGLGIPHRPPPYNLNATLASTRASPTSHPTQQLHPSYFQSQPRPIHYQQYFPHMYGGYGTNGLPYLGGAAMTSFFNPMIGMFGDMVLTRIFGVSDANLFPYPHSGSGSPTRIRRQEIQIDKSLNRVSIFLLCCIILCLLLF 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0514 295 MobiDBLite consensus disorder prediction 1 30 - -
Lal9g0514 295 SUPERFAMILY RING/U-box 74 138 - -
Lal9g0514 295 SMART ring_2 79 125 IPR001841 -
Lal9g0514 295 ProSiteProfiles Zinc finger RING-type profile. 79 126 IPR001841 -
Lal9g0514 295 Pfam Zinc finger, C3HC4 type (RING finger) 79 125 IPR018957 GO:0046872
Lal9g0514 295 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3-LIKE 46 295 - -
Lal9g0514 295 CDD RING-HC_AtRMA_like 77 127 - -
Lal9g0514 295 ProSitePatterns Zinc finger RING-type signature. 94 103 IPR017907 -
Lal9g0514 295 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 178 IPR013083 -
Lal9g0514 295 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 46 295 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0514 Lal-Chr9 3450335 3453968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0514 33 281 C3H Transcription Factor Family AT4G27470 44.048 7.51e-59 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0514 K10666 - gmx:100817526 347.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0514 9 3450335 3453968 Lal9g0514 9 3450335 3453968 ECH