Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0493 ATGAACCAAAAGGCCAACGTTTCTAAGGAACTCAACGCGAAACACAAAAAGATATTGGAAGGACTTCTAAAATTACCAGAGAATAAGGAATGTGCTGACTGCAAAGCTAAAGGTCCAAGATGGGCTAGTGTCAACCTTGGCATCTTTATTTGCATGCAATGTTCAGGAGTACATCGAAGTCTTGGGGTACACATATCAAAGGTTCGCTCTGCAACTTTGGACACTTGGCTCCCAGAGCAGGTTGCATTCATTCAATCGATGGGAAATAAGAAAGCAAATAATTACTGGGAAGCAGAATTACCTCCACATTATGATAGAGTTGGAATCGAAAATTTCATACGTGCAAAGTATGAAGAGAAGAGATGGGTTGCAAGGGATGGGAGACCAGCATCACCTTCTAGACTGCAAGAAGAAAAAGCTCCTTCACATTGGCAGAGACCTGTGGAAAGAGTTGGTCACGGTTATGGAGCTACATCTGAAAATACTTTTGTGGAAAGGAAGAAAATTCAATCATCAAATGCAATTCCTGGTATAAGAATTAGTGTTCCTGCCCCTCCCAAAGGACCTGACCAGACAACACCTGTGGCAAAACCTCAGCATGTTGACAAAGTGAAACCCATGGCAGCACAACTGCAAGCTGAAACTTTAAAGCAGACTACTGGATCAGATCAAAATATCCTTCCTAAAGTTGACTTTGCTACAGACCTTTTTGACATCTTGTCTGTGGATGGTCCAAGTGAAAAGGGCTCAGAGGCAGCTGGTGCTACTGCTGATGATAATAACTGGGCAGAATTTCAGTGTATGTTTTCGAATTTTGCCATAATTGTTTCAGCTGCTGCTGAGGCATCAACAGATGAGAAGACAGATACCCCAAGTGCAGTTGAGAGTACACCCCAGTCTACTTCTGGAATTGAGGATCTATTTAAAGATTCACATTCAGTGACACCAAGCTTAGCTCCAGAAAAACCACAAAAGGATGTCAAAAATGATATCATGAGCCTGTTTGAGAAGACCAATGTGGTATCTCCATTTGCTATGCATCAACAGCAGTTAGCCATGCTGGCACAGCAGCAGTCCCTTCTAATGGCTGGTGCAGCTAAATCTGCTGCTGGGGATCCCAAGCATCCTTCTAGTGTACAACAATATCAACATCAGCTGGCCATGCTGGCACAACAACAGTCTCTTCTAATGGCTGCAGCAGCTAAATCTACTGGTGGGGATCCCAAGTATCCTTCAAGCGTACAACAACCTGGGTCCAAGATTCCTGTCCAAAGTTGGCCAGCTGCTGGTTACCCAATTCCTGGAGTAAAACCCATGGGTGGTCAGGGAGAGTTGCAGAATCTCATGCAGACGATGAACATGACAGGAGTGCATCCAGCAGCGAGCTCAGTTCAATATCCACCTTCTAGTTTCTATCCTATGGGGCAAGTTGCTCCAGTTAATGGGACAATGACAACGGGAGTGAGTAAACCCCAATCTGCAGCAGCTCCAGCATCATCAACCACTTCACAGAAAGGGAAGGATTATGATTTTTCCTCCTTAACACAAGGAATGTTTGCCAAACAATGA 1569 0.4423 MNQKANVSKELNAKHKKILEGLLKLPENKECADCKAKGPRWASVNLGIFICMQCSGVHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNKKANNYWEAELPPHYDRVGIENFIRAKYEEKRWVARDGRPASPSRLQEEKAPSHWQRPVERVGHGYGATSENTFVERKKIQSSNAIPGIRISVPAPPKGPDQTTPVAKPQHVDKVKPMAAQLQAETLKQTTGSDQNILPKVDFATDLFDILSVDGPSEKGSEAAGATADDNNWAEFQCMFSNFAIIVSAAAEASTDEKTDTPSAVESTPQSTSGIEDLFKDSHSVTPSLAPEKPQKDVKNDIMSLFEKTNVVSPFAMHQQQLAMLAQQQSLLMAGAAKSAAGDPKHPSSVQQYQHQLAMLAQQQSLLMAAAAKSTGGDPKYPSSVQQPGSKIPVQSWPAAGYPIPGVKPMGGQGELQNLMQTMNMTGVHPAASSVQYPPSSFYPMGQVAPVNGTMTTGVSKPQSAAAPASSTTSQKGKDYDFSSLTQGMFAKQ 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0493 522 MobiDBLite consensus disorder prediction 484 522 - -
Lal9g0493 522 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Lal9g0493 522 CDD ArfGap 19 117 - -
Lal9g0493 522 MobiDBLite consensus disorder prediction 126 145 - -
Lal9g0493 522 Gene3D Arf GTPase activating protein 1 129 IPR038508 -
Lal9g0493 522 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Lal9g0493 522 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Lal9g0493 522 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Lal9g0493 522 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 381 IPR044520 GO:0005096
Lal9g0493 522 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 382 522 IPR044520 GO:0005096
Lal9g0493 522 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Lal9g0493 522 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Lal9g0493 522 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Lal9g0493 522 MobiDBLite consensus disorder prediction 284 305 - -
Lal9g0493 522 PANTHER ARF GTPASE ACTIVATOR 382 522 - -
Lal9g0493 522 PANTHER ARF GTPASE ACTIVATOR 1 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0493 Lal-Chr9 3315695 3321260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0493 16 164 C2H2 Transcription Factor Family AT4G05330 41.401 2.48e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0493 K12486 - gmx:100807561 747.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0493 9 3315695 3321260 Lal9g0493 9 3315695 3321260 ECH