Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0474 ATGAAAGAGGAGTCAATAGGACTGATTATTGGTGGTTCCACAGGTGTTGTTATTGGAATCATTTTGGCAGTTTTTGCACTTTTCTGCTTTAGGTTCCACCAAAAGCATTTACAGATAGGTAATAGCAGTTCCAGAAGGGCTATTGCCATACCAATTAGAACAAATGGTGCTGACTCTTGCACTGTTCTATCAGACTCAACCATAGGCACAGAGTCACCATTAAAGTTTGGATGGAATGGCATGTCGTTTTGGCTTGATGGATTTAACAAGAGTTACATGGTTTCTGCATCTGGACTACCTGAATATTCATACAAGGATTTGCAGAAGGCAACATATAATTTTACTACAGTAATAGGACAAGGTGCATTTGGTCTTGTTTATAAAGCTCACATGTCTACCGGTGAGATTGTTGCAGTTAAGGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAGGAATTTTATACAGAGGTCAATAACCATTACTTTGGCCACTCTGCCGCAGAATTTTACTGCATTTCATGTCATAAATTTCAGAGTAAAATGTATGTTAAATGTGGCAAGTTCATAAGATTCTTGGAGGAAGTCACTGGTGAAGAAAATATAGGAGTGGTTATGTTGTTGGGGAGGTTACACCATAGAAATCTGGTGAATTTGATAGGATATTGTGCAGAAAAGGGGCAACATATGCTTGTATATGTCTACATGAGTAAGGGTAGCTTAGCTTCTCACTTATATGGAGAAGAGGGTGAAGCACTGAGATGGGATATGAGGGTTCACATAGCTTTAGAAGTAGCAAGAGGCTTGGAGTATCTTCATGATGGGGCAGTTCCTCCGGTAATCCATCGAGATATCAAATCTTCCAATATTTTGTTGGACCAGTCCATGAGAGCCAGGGTTGCTGATTTTGGACTTTCAAGAGAGGAGATGGTGGATAAACATGCAGCTATTCGCGGTACCTTTGGTTATCTTGATCCTGAGTATATATCTTCAGGGAAATTCACCAAGAAAAGTGATGTATACAGTTTTGGTGTGTTGCTCTTTGAAATTATAGCTGGAAGAAACCCTCAGCAGGGTCTTATGGAATATGTTGAGCTTGCAGCAATGAATACTGAGGGAAAAGTTGGTTGGGAAGAAATTGCAGATTCCCACCTTGAAGGAAATTTTGATGTCCAAGAGCTGAATGAAGTGGCTGCCCTTGCCTACAAGTGTGTTAACCGCGCCCCAAAGAAGCGCCCTTCAATGAGGGATATAGTGTCAGTGTTAACAAGGATCCTTAAATCAAGGCACCATAGGAATCATCACAACAAGGCCTTGTCATCCACAGCAGAAGTTTACATTGATCTTGATCAGGCAGAGACCAAGAGTTCTGTTTCTAACCACCGGAGACAAGATTCAATGGATAGTGTAACAGACAATGAAGTGTAG 1425 0.4084 MKEESIGLIIGGSTGVVIGIILAVFALFCFRFHQKHLQIGNSSSRRAIAIPIRTNGADSCTVLSDSTIGTESPLKFGWNGMSFWLDGFNKSYMVSASGLPEYSYKDLQKATYNFTTVIGQGAFGLVYKAHMSTGEIVAVKVLATNSKQGEKEFYTEVNNHYFGHSAAEFYCISCHKFQSKMYVKCGKFIRFLEEVTGEENIGVVMLLGRLHHRNLVNLIGYCAEKGQHMLVYVYMSKGSLASHLYGEEGEALRWDMRVHIALEVARGLEYLHDGAVPPVIHRDIKSSNILLDQSMRARVADFGLSREEMVDKHAAIRGTFGYLDPEYISSGKFTKKSDVYSFGVLLFEIIAGRNPQQGLMEYVELAAMNTEGKVGWEEIADSHLEGNFDVQELNEVAALAYKCVNRAPKKRPSMRDIVSVLTRILKSRHHRNHHNKALSSTAEVYIDLDQAETKSSVSNHRRQDSMDSVTDNEV 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0474 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 279 291 IPR008271 GO:0004672|GO:0006468
Lal9g0474 474 Gene3D Phosphorylase Kinase; domain 1 87 164 - -
Lal9g0474 474 ProSitePatterns Protein kinases ATP-binding region signature. 118 140 IPR017441 GO:0005524
Lal9g0474 474 SUPERFAMILY Protein kinase-like (PK-like) 101 430 IPR011009 -
Lal9g0474 474 PANTHER OS01G0253100 PROTEIN 199 447 IPR045271 GO:0004714|GO:0006468
Lal9g0474 474 PANTHER OS01G0253100 PROTEIN 7 157 IPR045271 GO:0004714|GO:0006468
Lal9g0474 474 MobiDBLite consensus disorder prediction 452 474 - -
Lal9g0474 474 Gene3D Phosphorylase Kinase; domain 1 186 235 - -
Lal9g0474 474 Gene3D Transferase(Phosphotransferase) domain 1 236 449 - -
Lal9g0474 474 Pfam Protein tyrosine and serine/threonine kinase 204 421 IPR001245 GO:0004672|GO:0006468
Lal9g0474 474 MobiDBLite consensus disorder prediction 454 474 - -
Lal9g0474 474 ProSiteProfiles Protein kinase domain profile. 112 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal9g0474 474 SMART serkin_6 112 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal9g0474 474 PANTHER CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 1 199 447 - -
Lal9g0474 474 PANTHER CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 1 7 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0474 Lal-Chr9 3147326 3151561 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0474 102 421 Glycoside Hydrolase AT3G07070 39.763 7.26e-66 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Lal9g0474 PK_Tyr_Ser-Thr 2.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0474 - - gmx:100799586 674.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0474 9 3147326 3151561 Lal9g0474 9 3147326 3151561 ECH
Lal2g0538 2 3239765 3244714 Lal9g0474 9 3147326 3151561 LSH
Lal10g0639 10 14229786 14235422 Lal9g0474 9 3147326 3151561 PCT
Lal8g0872 8 6329657 6334066 Lal9g0474 9 3147326 3151561 PCT
Lal9g0474 9 3147326 3151561 Lal10g0639 10 14229786 14235422 PCT
Lal9g0474 9 3147326 3151561 Lal8g0872 8 6329657 6334066 PCT