Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0473 ATGCCAACAGTGTGGTTTTCTTTGAAGAAGTCTCTACAGTGCAAATCTGAGCCAAGTGATGTACATGACCCAAAATCAAGGAAGCATTTGAGTACAATCTTGACTAAGAAAACAGGAAGGTCAGGGTGTTCAAGGTCCATAGCAAATCTCAAAGATGTTATCCATGGAAGCAAGAGACATCTTGAGAAGCCACCAACTTGCAGTCCAAGATCCATAGGGAGCAGTGAGTTTCTCAACCCTATAACTCATGAGGTGATTTTAAGTAACTCAAGGTGTGAGTTGAAAATCACTGGCTATGGAGGGTTCCAAGAAGGGGTTGGAAACAATGGTGGTGGTAATAACAATGCTGGTGCTGCTACTGGTGGTTCAACATTTGTAGGTACTTTGAGGCCTGGGACTCCTGGCCCTGGAGGGCACCCTACAATGCATTACTTTAACCCTTCATTTAGGACTTCATCCACTCCTCCAAGGAAATCTCCTTTCCTTTTGTCAGAAGGGTCTAGTTTTCATGGTGCTGGAGCTGGACTTCATTCAAGTAACAGGATGTCTCTTGAGACAGATTCAAATGGTTCTTCAACTGTGACTTGCCACAAATGTGGAGAGCAATTTAACAAATGGGATGCTGCTGAAACTCATCATCTATCCAAGCATGCTGTTACTGAACTTGTGGAAGGTGATTCATCAAGGAAAATAGTGGAGATCATATGCAGGACAAGCTGGTTAAAGTCTGAAAACCACTGTGGTAGAATTGAGAGAGTTTTGAAAGTCCACAACATGCAAAAGACATTGGCTAGATTTGAAGAGCACAGAGAGATGGTAAAAATCAAAGCAAGTAAACTTCAGAAGAAGCATCCTAGGTGCCTGGCTGATGGAAATGAGCTTTTGAGGTTCTATGGCACCACTGTTGCATGCTCTCTTGGTCACAATGGCTCTTCAAGTCTATGCCTATCAGAAAAATGCTGTGTGTGTAGAATCATCAGAAATGGTTTTTCTGCTAAGAAGGAACTCAAGGATGGCATAGGTGTTTTCACAACATCCACAAGTGGAAGAGCTTTTGAGTCTATAGAGATTCTTTGTGATGATCTTTCACTAAGAAAAGCACTTATTGTTTGCAGAGTAATTGCTGGCAGGGTTCATAGGCCTTTAGAGAACATTCAGGAAATTGCAGCCCAAACAGGGTTTGACTCATTGGCTGGGAAAGTTGGTCTTTATTCAAATATTGAGGAGCTTTATTTGCTCAATCCTAGAGCTCTTCTTCCTTGCTTTGTGGTAATTTGTAAACCATGA 1287 0.4204 MPTVWFSLKKSLQCKSEPSDVHDPKSRKHLSTILTKKTGRSGCSRSIANLKDVIHGSKRHLEKPPTCSPRSIGSSEFLNPITHEVILSNSRCELKITGYGGFQEGVGNNGGGNNNAGAATGGSTFVGTLRPGTPGPGGHPTMHYFNPSFRTSSTPPRKSPFLLSEGSSFHGAGAGLHSSNRMSLETDSNGSSTVTCHKCGEQFNKWDAAETHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENHCGRIERVLKVHNMQKTLARFEEHREMVKIKASKLQKKHPRCLADGNELLRFYGTTVACSLGHNGSSSLCLSEKCCVCRIIRNGFSAKKELKDGIGVFTTSTSGRAFESIEILCDDLSLRKALIVCRVIAGRVHRPLENIQEIAAQTGFDSLAGKVGLYSNIEELYLLNPRALLPCFVVICKP 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0473 428 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 428 - -
Lal9g0473 428 Coils Coil 263 283 - -
Lal9g0473 428 SUPERFAMILY ADP-ribosylation 219 427 - -
Lal9g0473 428 Gene3D - 208 427 - -
Lal9g0473 428 PANTHER - 2 428 - -
Lal9g0473 428 ProSitePatterns Zinc finger C2H2 type domain signature. 196 217 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0473 Lal-Chr9 3142700 3144888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0473 1 428 C2H2 Transcription Factor Family AT5G54630 68.251 0.0 583
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal9g0473 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0473 - - lang:109355134 781.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0473 9 3142700 3144888 Lal9g0473 9 3142700 3144888 ECH
Lal2g0537 2 3235404 3238034 Lal9g0473 9 3142700 3144888 LSH