Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0470 ATGGTTTCAGAGGAAAACAACAATTGGCTTTTGGAATGTGACTTCATTGACGATATTCCAGTTCCTGTTTCTTCTTCCACTTTCAATTGGGCCCCACATCACTTCAACCCTTTTCCCATTAACAGTGTTGAAATTGATGGCTCATTGGGCGATTCTAGTGGTCTCAAAGATTCTGGTTCAAGGAAGAGGGGTAGATCTGAGGCATGTACTGCTTCTAGCTCCAAAGCATGCCGAGAGAAGCTGCGAAGGGATAGACTTAATGACAAGTTTATTGAATTAAGCTCCATTTTGGAGCCTGGAAGGCCTCCAAAAACAGACAAGGCTTCTATACTGATTGATGCTGTCCAAATGGTGACACAGTTACGGAGTGAAGCCCAGAAGTTGAAAGATTCAAATATGGGTCTTCAAGAAAAGATTAAAGAGTTAAAGGCTGAGAAGAATGAACTTCGTGATGAGAAACAAAGGCTGAAGGCAGAGAAAGAGAAGTTGGAGCAGCAGCTGATGTCTATGAATGCACAACCTAGTTTCTTGCCTTCCCCTGCTGCAATCCCTACCGCTTTTTCTGCACAAGGCCAAGCCGCTTTTGCTGCACAAGGCCAAGCCGCTTTTGCTGCACAAGGCCAAGCCGCTTTTGCTGCACAAGGCCAAGCCGCTTTTGCTGCACAAGGCCAAGCCGCTTTTGCTGCACAAGGCCAGGCCCTTGGCAACAAGCTGGTACCTTTTATTAGTTATCCAGGAGTTGCAATGTGGCAATTTATGCCACCTGCTTCAGTGGATACCTCACAGGATCATGTACTCCGTCCTCCAGTTGCCTAA 816 0.4632 MVSEENNNWLLECDFIDDIPVPVSSSTFNWAPHHFNPFPINSVEIDGSLGDSSGLKDSGSRKRGRSEACTASSSKACREKLRRDRLNDKFIELSSILEPGRPPKTDKASILIDAVQMVTQLRSEAQKLKDSNMGLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQLMSMNAQPSFLPSPAAIPTAFSAQGQAAFAAQGQAAFAAQGQAAFAAQGQAAFAAQGQAAFAAQGQALGNKLVPFISYPGVAMWQFMPPASVDTSQDHVLRPPVA 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0470 271 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 74 140 IPR036638 GO:0046983
Lal9g0470 271 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 70 121 IPR011598 GO:0046983
Lal9g0470 271 PANTHER BHLH TRANSCRIPTION FACTOR 224 271 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Lal9g0470 271 PANTHER BHLH TRANSCRIPTION FACTOR 1 194 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Lal9g0470 271 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 194 - -
Lal9g0470 271 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 224 271 - -
Lal9g0470 271 CDD bHLH_AtILR3_like 75 150 - -
Lal9g0470 271 Pfam Helix-loop-helix DNA-binding domain 74 121 IPR011598 GO:0046983
Lal9g0470 271 Gene3D - 71 148 IPR036638 GO:0046983
Lal9g0470 271 SMART finulus 76 127 IPR011598 GO:0046983
Lal9g0470 271 Coils Coil 118 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0470 Lal-Chr9 3121585 3124293 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0470 1 271 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 59.140 1.04e-102 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal9g0470 HLH 3.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0470 - - gmx:100788858 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0470 9 3121585 3124293 Lal9g0470 9 3121585 3124293 ECH
Lal1g0537 1 3452330 3455207 Lal9g0470 9 3121585 3124293 LSH
Lal8g0866 8 6292156 6294893 Lal9g0470 9 3121585 3124293 PCT
Lal9g0470 9 3121585 3124293 Lal8g0866 8 6292156 6294893 PCT