Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0467 ATGTTGCAAAAGAGAAGAGTATTATCTCTCCATAGGGAGGGTGGAAGGGGAAAATATATGGGAAATAATAGCATGTTTCGTTATGCAGATGGAATGGACAAGTTGTTGATGTTGTTTGGAACCCTTGGAAGCATTGGAGATGGGCTTCAGAACCCTCTAATGATGTATATTCTTAGTGATGTGATCAATGCCTATGGAGATAAGAATAGCATTTTGACAATGCATGATGTTAATAAGTATGCATTGAGGCTTTTACTTGTTGCAATTGGAGTTGGGATTTCTGCTTTTATTGAAGGAGTATGTTGGACAAGAACTGCAGAGAGACAAGCATGGAGAATGAGAATGGAATTCATGAAATCTGTCCTAAGACAAGAAGTTGGTTTCTTTGACACTAAGAATGATGGTTCTTCAACAAGCTATCAAGTTGTCTCACTCATTTCTTCAGATTCTAATACAATCCAAGTTGCCTTGAGTGAGAAGATACCTTGCTTCATGGCTTACATGTCCACCTTCTTCTTCTGTCATATCTTTGCATTTTTGCTTTCATGGAGACTTACATTGGCATCCATACCACTCTCTATCATGTTCATTCTTCCAGCACTTATATTCCGGAAGATAATGTTGGATCTCGGAACGAAAATGATTGAGTCTTATGGTCTTGCTGGTGGGATTGCAGAACAAGCAATATCTTCAATAAGAACAGTTTATTCTTATATTGGGGAGAATCAAACACTAGACAGATTTAGCAGTGCACTTCAAAAAAACATGGAATTTGGAATAAAGCAAGGCTTTGCAAAAGGGTTGATGTTAGGAAGCTTGGGAGTTATTTACATAAGTTGGGGTTTTCAGGCTTGGGTTGGAACTATGCTAATCACTGATAAAGGAGAAAAAGGTGGCCATGTATTTGTAGCTGGTTTCAATGTCCTCATGGGAGGGTTGAGCATTTTAAGTGCACTTCCAAATTTAACTGCAATCACTAAGGCAAATGTTGTCGTGATTCGTCTTTATGAAATGATTGATAGGGTGCCAACTATAGATTCTGAAAATAAAATTGGAAAGGCTTTATCATATATTAGAGGAGGTATTGAATTTCAAAACATCTACTTCTGTTACCCATCTAGGCCAGAAGTACCAGTCTTGCAAGGATTCAATCTCACTATTCCTGCAGGCAAGAGATTAGGCCTTGTAGGGGGTAGTGGTTCAGGCAAATCCACTATCATTGCACTGCTTCAGAGATTTTATGACCCTGTTGAAGGAGAAATACTCTTGGATGGCCACAAGGTTAATAGACTTCAATTGAAATGGTGGAGATCTCAACTTGGCCTAGTGAATCAAGAGCCTGTTCTTTTTGCTACATCCATAAAAGAGAACATATTGTTTGGAAAAGAAGGGGCTTCAATGGATAGCGTGATAAGTGCGGCTAAATCAGCAAATGCACATGATTTCATTGTCAAGTTACCAGATGGATATGAAACTCAAGTTGGGAAGTTTGGAATGTCATTGTCTGGTGGGCAGAAGCAGCGCATTGCGATAGCAAGAGCTTTACTGAGGGATCCAAAGGTTCTCCTGCTCGATGAAGCGACCAGTAAACTTGATGCACAATCTGAAAGAGTAGTACATGCTGCAATTGATCAAGCTTCAAGAGGAAGGACTACAATCATCATTGCTCACCGCCTATCCACAATACGAATAGCCGACATTATTACAGTCCTTCAAGCAGGTAGAGTGATAGAATCAGGTAGTCATAATGAGCTCATGGAAATGAATGGTGGAGAAGGTGGAGAGTATGCTAAAATGGTTGAGTTGCAGCAAGTAACAACTCAGAATGATGAATTTAAAACTTCCGATACTCAAATTGAGGGAAGGAGGAGTTTCCACCATCACAGCCACAGGATGAGCGGTATTCCCCAAAGCCCAGGAGTAAGTTTCAAATCAAGCACACAAAGCACACCAATGTTATCTCCCTTAAGCCAGGGATTTTCTATGGGCACACCATACTCTTATTCGATCCAATACGACTACGATGATGCTAGTTTTGAAGATAACTTGAAAAGAACAAATTATCCAGCTCCTTCACGTTGGCGTTTGCTGAAAATGAATGCACCTGAATGGGGAAATGCAGTGCTTGGAGTCTTGGGAGCAATAGGCTCAGGAGCAGTACAATCAATGCATGCATATTGTGTAGGAGCACTTATATCATTTTACTTTGAACCTCAAAACTCCAAGATGAAGTCTAAAACCAGAACCCTGGCCCTCACTTTCTTAGGAATTGGTGTTTTTAACTTCTTCGCAAGCATTCTCCAACACTATAATTTTGCAATTATGGGAGAGAGGTTGACTAAAAGAATACGAGAGAAAATACTAGGAAAGTTGATGACATTTGAGGTAGGGTGGTTTGATAGTGAAGATAACAAAAGTGCAGCCATTTCTGAAAGATTATCCTCTGACGTAAACTTGGTTCATTCTCTAGTTGGGGACCGTATCTCATTGTTGGCACAAGCTGTTTCTGGTTCTGTCTTTGCTTACACTCTAGGACTTTTACTCACATGGAGGCTTTCCCTAGTGATGATTGCAGTGCAGCCAATAGTCATTGGAAGCTTTTACTCAAGAAGTGTCTTGATGAAGAGTATGGCCGAAAAATTGCGCAAAGCACAACGTGAAGGAAGCCAACTTGCAAGTGAAGCTGTTATAAAGCACAGAACCATAACTGCCTTCAGTTCACAGAAAAGAATGTTGGCACTTTTCAAATCCACAATGATAGGCAATAAAAAGAAGAGTATTAGGCAGTCATGGATTTCAGGCCTTGGTCTTTTCATCTCACAATTTTTTAACACTGCATCAACAGCATTAGCTTTTTGGTATGGTGGGAGGCTCTTGGTAGATAACCTTATAGAACCAAAGCATCTCTTCCAAGCATTTTTAATACTGCTATTCACTTCATATACTATTGCAGAAGCTGGAACCATGACTTCTGACATGTCTAAAGGAAACAGTGCAGTTGGATCAGTTTTTTCTATCCTGGACAGGAACACTGAGATTGATCCTGAGACATCATGGGGGGCAAACAAGAAAAGGAAAATAAAGGGCAGGGTGGAGCTTAAAAGTGTGTTCTTTGCATATCCAACTAGACCAAACCAGATGATACTCAAGGGTATGTGTCTTAAAGTTGAGGCTGGGAGACAAGTAGCACTAGTTGGGCATTGTGGTAGTGGTAAGTCCACTATTATTGGTCTTATTGAAAGGTTTTATGATCCTGCGAATGGAACTGTATGCATAGATGACCAAGATGTCAAGTCCTATAATTTGAGAATACTGAGATCACATATTGCATTGCTAAGTCAGGAGTCAACCCTTTTTGCCGGAACCATTCGAGAAAACATTGCCTATGGGAAAGCAAATGCAACTGAATCTGAGATAAGAAAGGCTGCTGCTATGGCTAATGCTCATGAATTCATAAGTGGAATGAAAGATGGGTATGAAACATATTGTGGAGAAAGAAGAGTTGATCTATCAAGAGGTCAGAAACAAAGAATAGCCTTAGCTAGAGCCATAATAAAGAACCCAACAATTCTACTTCTGGATGAGGCTACAAGTGCACTTGACAATGTATCAGAGAAGTTAGTCCAAGAAGCACTTGAGAAAATGATGGTTGGAAGAACATGCATAATTGTGGCACATAAACTATATACTATACAACAGTGCAATAACATTGTTGTGATTAAGAATGGGAAGGTTGTGGAACAAGGATCACATAATGAATTAATTTCACTTGGACATGATGGAGTATATTGTACTCTTCTTAAACTTCAAGGTGAGGATTTGTCTGACGAGAGTGCCACTACTACGCAGCTTTCTTTTATATTGTACTCTCCGCCGAGAGAATGTGCTGGTCCTCAGAAAAGTGATGACAGTGAAGAAAAAATGAAAAGTCCATTAGATATTCCTTGGCTTACAGACCGGCTTGATGGTGATTTTTCACATAAACGGAAAGAGACATCGCGTGAGAGGAAGCATAAATGCATTTTTAAATTCTCGGGTGAAGGCCGTTTTGATAGAGTAGCTGACATGTGCAGCCAAAAACTAGGAACAGGAGCTACCCTTGATGTATTTAGTAAGTTGGGTCGAGCAACAGGTGTGAAAGAGTACAATGCATTGATAAAGGTGTGCATAAAAAAGGCCAGGAGAACAGACGACGAAGGGGTTGCTGTTGACGAAATAGTGAAGGCCTTTCACATTTTCAAATCAATGAGGGAACGTGGTTTTCCACTAGAAGAGCAAACATATCGCCCACTTCTTCATTATTTAAATGACATGGGTTTTGTTCGGGAATTCGGACTTTTCTCTAATGTTATCAAAGACGAGAATCCCAATTCCGCTTCACGATTAGGTTACTATGAAATGATGTTGTGGATAAGAGTTAACAATGAAGAAATGATTCAGGACATCTGTGAATATATTACAGTTGAAAATAGTGAAGATACTTCTGCTTTACGAGAAAGTTACTTATTGGCTCTTTGTGAAAGTGACCGGAAGACACAGATTATGGATGTATTGAAAAATGTAGACATAACTAAGTTATCATCTGCAAAATCTATGGCAAGTGTATTCCAATCGTTAGGCCGGCTACAGCAGAAATCATTTGCAGAAAATTTACTTTTGGATTTGAGAGCGCGTGTGGAGGTGGTAACTGGTGATAGGGAAGGGATGAATGGTGAAGAGATGTGGGAATGGGTTCGGGTTCAAAGGGTATGGCAGAGGCTGGGGGAAATCAAGGATCACAATTCAGATGATATTTCAGAGTTCGTTGTTAGTTATGCTGTTAGCATTCCAAATTTAGTGGTGGATGATATCGTCTCAAAAGTCAACGATTTGCACCAACTATTGGAAGTTCTACCTTCAACCTCATCATATGAAATGCTCATCTCATATTGCTGTAGCATACGCAAGGCAGAAGCAGCTCTTGATATTGTTGATAAAATGTGTCAAGCAGGCCATACCTCTAAAACTGCAATTTTACAGTCCATAATACAAATTTGTACGGAGACGTACGAATATAGTTTGTTTGAAGGTGCATACAAAATGGTTGATGACTTAGAGAAAATGAATTTCAAACCTACGACAGCAATGTACAATGCTATAATGGCAGGATATTTTCGAGAGAAAAACATCAGTGGCGGGTTGAGGGTCCTCAAGCACATGCTAAGTGCCAATATAAAACCTGATTCACAGACTTTTGGCTATTTAATTGGCAACTGTGAAACAAAAGAGGATATAATCAAGTATTATGAAGAGATGAAGCAAGCTGAAATCAAACCGACAAAGCATATTTATATGGCCCTTATTAATTCATACGCAGCTTGTGGCGAATTGGAGAAGGCAAAACAGATCGTTGCAGACCCAAAGATACCAGTTAAGATTTTAAATGAAATCAAGAGTGTCCTTGTCTCAGCTCTTGCAACACATGGGAAATTGTCTGAGGCACTTCTTGTGTATGAGGAGATTAAGAATGCTGCACAAAACTTGGAGCCAAAAGCTATTATGAATCTCATTGACGGGGTCATTCAATTTGAAGGAGAGTTGGATGGTTTGCTTGTGCTACTTAATGAATTGAGTGATCGAAACTACTGGGTTGAAGGTTGCTTCAGAATTATCACGTACTGTGTTCAGAGCAAGAATTTAAGTGGTGCTATTAAATTGTTCAAGCAACTCAAGAGTATGTTCGAAAGTGATGAATTAGTAATGGAAGCTCTCTTTGACGCGGTATTTTCCTTAATCGCCGAGTCGCAGTCCACACATTTACAGATTGGTTTGGACTTGCTTTGGGCAATCAAGGATGAACTCAACCTTGTACCTTCACGACAATGTCTTGATTTTCTTCTAACCAGTTGTGCCAATGCCGGAGATTTGGATAATGCTCGCTTGATTTGGAAAGAATATGAGGTTGCTGGATATCCTTACAATGTATTAAGTTACTTGAGGATGTATCATGCACTTTTGGCTTCAGGAGATCATAAATCTGCTAACATTATGCTCAAGAAAATTCCGAAAAGTGACACAGAGGTTTGTTGTGTCATCAAAGCATGTCAAGATAAGTACCATGAAGATCCTAACTCTGTAGGAACTAAGATAAAGAAAGGGAAGCAAAAGAAAGAAAAGAGGGAGACTTGA 6168 0.3964 MLQKRRVLSLHREGGRGKYMGNNSMFRYADGMDKLLMLFGTLGSIGDGLQNPLMMYILSDVINAYGDKNSILTMHDVNKYALRLLLVAIGVGISAFIEGVCWTRTAERQAWRMRMEFMKSVLRQEVGFFDTKNDGSSTSYQVVSLISSDSNTIQVALSEKIPCFMAYMSTFFFCHIFAFLLSWRLTLASIPLSIMFILPALIFRKIMLDLGTKMIESYGLAGGIAEQAISSIRTVYSYIGENQTLDRFSSALQKNMEFGIKQGFAKGLMLGSLGVIYISWGFQAWVGTMLITDKGEKGGHVFVAGFNVLMGGLSILSALPNLTAITKANVVVIRLYEMIDRVPTIDSENKIGKALSYIRGGIEFQNIYFCYPSRPEVPVLQGFNLTIPAGKRLGLVGGSGSGKSTIIALLQRFYDPVEGEILLDGHKVNRLQLKWWRSQLGLVNQEPVLFATSIKENILFGKEGASMDSVISAAKSANAHDFIVKLPDGYETQVGKFGMSLSGGQKQRIAIARALLRDPKVLLLDEATSKLDAQSERVVHAAIDQASRGRTTIIIAHRLSTIRIADIITVLQAGRVIESGSHNELMEMNGGEGGEYAKMVELQQVTTQNDEFKTSDTQIEGRRSFHHHSHRMSGIPQSPGVSFKSSTQSTPMLSPLSQGFSMGTPYSYSIQYDYDDASFEDNLKRTNYPAPSRWRLLKMNAPEWGNAVLGVLGAIGSGAVQSMHAYCVGALISFYFEPQNSKMKSKTRTLALTFLGIGVFNFFASILQHYNFAIMGERLTKRIREKILGKLMTFEVGWFDSEDNKSAAISERLSSDVNLVHSLVGDRISLLAQAVSGSVFAYTLGLLLTWRLSLVMIAVQPIVIGSFYSRSVLMKSMAEKLRKAQREGSQLASEAVIKHRTITAFSSQKRMLALFKSTMIGNKKKSIRQSWISGLGLFISQFFNTASTALAFWYGGRLLVDNLIEPKHLFQAFLILLFTSYTIAEAGTMTSDMSKGNSAVGSVFSILDRNTEIDPETSWGANKKRKIKGRVELKSVFFAYPTRPNQMILKGMCLKVEAGRQVALVGHCGSGKSTIIGLIERFYDPANGTVCIDDQDVKSYNLRILRSHIALLSQESTLFAGTIRENIAYGKANATESEIRKAAAMANAHEFISGMKDGYETYCGERRVDLSRGQKQRIALARAIIKNPTILLLDEATSALDNVSEKLVQEALEKMMVGRTCIIVAHKLYTIQQCNNIVVIKNGKVVEQGSHNELISLGHDGVYCTLLKLQGEDLSDESATTTQLSFILYSPPRECAGPQKSDDSEEKMKSPLDIPWLTDRLDGDFSHKRKETSRERKHKCIFKFSGEGRFDRVADMCSQKLGTGATLDVFSKLGRATGVKEYNALIKVCIKKARRTDDEGVAVDEIVKAFHIFKSMRERGFPLEEQTYRPLLHYLNDMGFVREFGLFSNVIKDENPNSASRLGYYEMMLWIRVNNEEMIQDICEYITVENSEDTSALRESYLLALCESDRKTQIMDVLKNVDITKLSSAKSMASVFQSLGRLQQKSFAENLLLDLRARVEVVTGDREGMNGEEMWEWVRVQRVWQRLGEIKDHNSDDISEFVVSYAVSIPNLVVDDIVSKVNDLHQLLEVLPSTSSYEMLISYCCSIRKAEAALDIVDKMCQAGHTSKTAILQSIIQICTETYEYSLFEGAYKMVDDLEKMNFKPTTAMYNAIMAGYFREKNISGGLRVLKHMLSANIKPDSQTFGYLIGNCETKEDIIKYYEEMKQAEIKPTKHIYMALINSYAACGELEKAKQIVADPKIPVKILNEIKSVLVSALATHGKLSEALLVYEEIKNAAQNLEPKAIMNLIDGVIQFEGELDGLLVLLNELSDRNYWVEGCFRIITYCVQSKNLSGAIKLFKQLKSMFESDELVMEALFDAVFSLIAESQSTHLQIGLDLLWAIKDELNLVPSRQCLDFLLTSCANAGDLDNARLIWKEYEVAGYPYNVLSYLRMYHALLASGDHKSANIMLKKIPKSDTEVCCVIKACQDKYHEDPNSVGTKIKKGKQKKEKRET 2055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0467 2055 CDD ABC_MTABC3_MDL1_MDL2 362 603 - -
Lal9g0467 2055 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 603 IPR027417 -
Lal9g0467 2055 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1633 1667 IPR002885 -
Lal9g0467 2055 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 708 995 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal9g0467 2055 Gene3D - 360 616 IPR027417 -
Lal9g0467 2055 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 330 - -
Lal9g0467 2055 ProSitePatterns ABC transporters family signature. 501 515 IPR017871 GO:0005524
Lal9g0467 2055 MobiDBLite consensus disorder prediction 2034 2055 - -
Lal9g0467 2055 CDD ABC_6TM_Pgp_ABCB1_D2_like 697 1013 - -
Lal9g0467 2055 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1031 1267 IPR003439 GO:0005524
Lal9g0467 2055 SMART AAA_5 1058 1243 IPR003593 -
Lal9g0467 2055 SMART AAA_5 389 575 IPR003593 -
Lal9g0467 2055 TIGRFAM PPR: pentatricopeptide repeat domain 1709 1742 IPR002885 -
Lal9g0467 2055 Coils Coil 874 894 - -
Lal9g0467 2055 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 28 1271 - -
Lal9g0467 2055 Pfam ABC transporter transmembrane region 709 980 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal9g0467 2055 Pfam ABC transporter transmembrane region 37 312 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal9g0467 2055 Gene3D - 1021 1279 IPR027417 -
Lal9g0467 2055 SUPERFAMILY ABC transporter transmembrane region 694 1009 IPR036640 GO:0005524|GO:0016021
Lal9g0467 2055 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 28 1271 IPR039421 -
Lal9g0467 2055 Pfam PPR repeat 1813 1835 IPR002885 -
Lal9g0467 2055 Pfam PPR repeat 1776 1796 IPR002885 -
Lal9g0467 2055 Pfam PPR repeat 1636 1664 IPR002885 -
Lal9g0467 2055 Gene3D ABC transporter type 1, transmembrane domain 85 905 IPR036640 GO:0005524|GO:0016021
Lal9g0467 2055 MobiDBLite consensus disorder prediction 629 648 - -
Lal9g0467 2055 Pfam ABC transporter 1049 1198 IPR003439 GO:0005524
Lal9g0467 2055 Pfam ABC transporter 380 529 IPR003439 GO:0005524
Lal9g0467 2055 Gene3D Tetratricopeptide repeat domain 1618 1878 IPR011990 GO:0005515
Lal9g0467 2055 Gene3D Tetratricopeptide repeat domain 1881 2054 IPR011990 GO:0005515
Lal9g0467 2055 Coils Coil 1193 1213 - -
Lal9g0467 2055 Pfam PPR repeat family 1705 1752 IPR002885 -
Lal9g0467 2055 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 327 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal9g0467 2055 CDD ABC_MTABC3_MDL1_MDL2 1031 1270 - -
Lal9g0467 2055 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1706 1740 IPR002885 -
Lal9g0467 2055 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1025 1270 IPR027417 -
Lal9g0467 2055 SUPERFAMILY ABC transporter transmembrane region 25 343 IPR036640 GO:0005524|GO:0016021
Lal9g0467 2055 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 362 598 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0467 Lal-Chr9 3080371 3100694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0467 25 1270 Calmodulin-binding Proteins AT2G36910 41.481 0.0 957
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0467 K05658 - gmx:100789562 2001.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0467 9 3080371 3100694 Lal9g0467 9 3080371 3100694 ECH