Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0445 ATGGCGGTTCCTCTTCTTCTTCGTTCTCTCTGGTCCTCTACTAGAAAACCCTCTCCTTCTCCCTCTTCTCCTTTCATTTCTAAACTCAACTACTTCTCACGCGCCTTCTCCTCCGCCGCCCCCGCCGCCGCCGCACCTCCCGTCCCCTCCTCCATCAACCCTAGCCACCTCCGAAACGTCGCCGTTATCGCTCATGTCGACCACGGTAAGACCACTCTCATGGATCGGCTCCTCCGTCAGTGCGGCGCCGATATCCCTCATGAACGAGCCATGGATTCCATTTCCCTTGAACGCGAGCGCGGCATCACTATTTCTTCCAAGGTTACATCGATTTCTTGGAAAGAATATGAGCTGAATATGGTTGATACTCCCGGACATGCTGATTTTGGTGGTGAAGTTGAACGTGTTGTTGGTATGGTTGAGGGAGCAATTTTGGTTGTTGATGCTGGTGAAGGTCCACTTGCGCAAACAAAATTTGTCCTTGCAAAGGCCTTAAAATATGGATTGCGGCCTATTCTTCTTTTAAACAAAGTAGATCGACCTTCAGTTACTGAGGAAACATGTAATGAAGTTGAGAGTTCGGTGTTTGATCTATTTGCCAACCTGGGTGCTACAGAGGAGCAACTAGACTTCCCAGTACTTTATGCTTCTGCTAAAGATGGATGGGCATCCACCACTTTTACCAAGGATCCTCCTGATCAGGCCAAAAATATGTCGCAGTTGCTTGATGCCATTGTTACACATGTCCTACCACCAAATGCAAGAATTGAAGCTCCTTTCCAAATGCTGGTTTCAATGATGGAACGAGACTTCTATCTTGGGCGAATTTTGACTGGACGCATATATTCTGGGGTTGTTCGTGTTGGTGACAGGGTTCATGGACTACGTAATAACGACTCCGTTGCTGAAAAGATTGAAGATGGAAAGGTGGTGAAACTGATGAAAAAGAAGGGTACAAACATGGTTCAAATTGATTGTGCTGGAGGTGGTGATATAGTTTCAATTGCTGGCTTGGCAAGCCCGTCAATAGGCCATACAGTAGCCACTGTTGAGGCTATGTCTGTATTGCCCACAGTTGTATTGGATCCTCCAACAATTTCTATGACCTTTGGAGTAAATGACTCCCCATTGGCTGGTCGTGATGGCACTCATTTAACTGGAGGAAGAATTGGTGACCGGCTTATGGCTGAGGCTGAAACAAACCTTGCCATAAATGTATTGCCAGGCTTATCAGAATCATTTGAAGTTCAGGGAAGAGGAGAGCTACAGCTGGGTATCCTAATTGAGAATATGAGACGTGAGGGATTTGAGTTATCTGTCTCCCCACCTAAAGTCATGTATAAAACTGAAAATGGTCAAAAGCTCGAGCCAGTTGAAGAAGTTACAATTGAGGTAAATGATGAGCATGTTGGGTTGGTCATGGAAGCCTTGTCTCATAGGCGAGCTGAAGTTACTGACATGGGTCCTGTCTCAGGAACTGTTGGTCGGACTAGATTGTCTTTGACTTGTCCATCAAGGGGACTAGTTGGTTACAGGAGTGTGTTCAGCACTGACACACGTGGAACAGGATTTATGCATTGTGCTTTCTACGCATATGAAAAATTCCGAGGCCCTCTTGGCAATGTTAGGAAAGGCGTACTGGTGTCAATGGGTTATGGTACAATCACAGCTCATGCATTGATGAGCTTAGAAGCTCGTGGGACTCTTTTTGTATCACCTGGAATGGAGGCATATGATGGAATGATTGTAGGGGAACACTCGAAGGATACAGATCTTGATATCAATCCTGTGAGAGCTAAAGCACTTACAAATGTGCGTGCTGCTTCCAAGGATGAGAATGTGAAGCTGACTCCTCCTCGCCTTATAACACTTGAAGAAGCTATTGGGTACGTAGCTTCGGATGAGCTTATTGAGGTTACACCCAAGTTCATCCGGTTACGGAAGAAATACCTTGATGTTAACAAGCGCAAGAGCATGAGTAAAAAACCAAAGGAATGA 1998 0.4585 MAVPLLLRSLWSSTRKPSPSPSSPFISKLNYFSRAFSSAAPAAAAPPVPSSINPSHLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITISSKVTSISWKEYELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPSVTEETCNEVESSVFDLFANLGATEEQLDFPVLYASAKDGWASTTFTKDPPDQAKNMSQLLDAIVTHVLPPNARIEAPFQMLVSMMERDFYLGRILTGRIYSGVVRVGDRVHGLRNNDSVAEKIEDGKVVKLMKKKGTNMVQIDCAGGGDIVSIAGLASPSIGHTVATVEAMSVLPTVVLDPPTISMTFGVNDSPLAGRDGTHLTGGRIGDRLMAEAETNLAINVLPGLSESFEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENGQKLEPVEEVTIEVNDEHVGLVMEALSHRRAEVTDMGPVSGTVGRTRLSLTCPSRGLVGYRSVFSTDTRGTGFMHCAFYAYEKFRGPLGNVRKGVLVSMGYGTITAHALMSLEARGTLFVSPGMEAYDGMIVGEHSKDTDLDINPVRAKALTNVRAASKDENVKLTPPRLITLEEAIGYVASDELIEVTPKFIRLRKKYLDVNKRKSMSKKPKE 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0445 665 SUPERFAMILY Translation proteins 202 357 IPR009000 -
Lal9g0445 665 Pfam Elongation factor Tu GTP binding domain 57 249 IPR000795 GO:0003924|GO:0005525
Lal9g0445 665 Gene3D - 55 253 IPR027417 -
Lal9g0445 665 CDD TypA_BipA 57 252 - -
Lal9g0445 665 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 5 664 - -
Lal9g0445 665 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 92 107 IPR031157 -
Lal9g0445 665 Gene3D Elongation Factor G (Translational Gtpase), domain 3 365 649 - -
Lal9g0445 665 CDD BipA_TypA_C 456 536 IPR035651 -
Lal9g0445 665 Gene3D - 447 541 - -
Lal9g0445 665 Pfam Elongation factor G C-terminus 454 537 IPR000640 -
Lal9g0445 665 TIGRFAM TypA_BipA: GTP-binding protein TypA/BipA 57 657 IPR006298 GO:0005525
Lal9g0445 665 PRINTS GTP-binding elongation factor signature 59 72 IPR000795 GO:0003924|GO:0005525
Lal9g0445 665 PRINTS GTP-binding elongation factor signature 99 107 IPR000795 GO:0003924|GO:0005525
Lal9g0445 665 PRINTS GTP-binding elongation factor signature 119 129 IPR000795 GO:0003924|GO:0005525
Lal9g0445 665 PRINTS GTP-binding elongation factor signature 135 146 IPR000795 GO:0003924|GO:0005525
Lal9g0445 665 PRINTS GTP-binding elongation factor signature 171 180 IPR000795 GO:0003924|GO:0005525
Lal9g0445 665 PANTHER ELONGATION FACTOR FAMILY PROTEIN 5 664 - -
Lal9g0445 665 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 55 253 IPR000795 GO:0003924|GO:0005525
Lal9g0445 665 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 262 IPR027417 -
Lal9g0445 665 TIGRFAM small_GTP: small GTP-binding protein domain 58 201 IPR005225 GO:0005525
Lal9g0445 665 CDD BipA_III 364 441 - -
Lal9g0445 665 Gene3D bipa protein 542 657 IPR042116 -
Lal9g0445 665 SUPERFAMILY EF-G C-terminal domain-like 362 445 IPR035647 -
Lal9g0445 665 Gene3D Translation factors 255 358 - -
Lal9g0445 665 SUPERFAMILY EF-G C-terminal domain-like 456 572 IPR035647 -
Lal9g0445 665 CDD BipA_TypA_II 260 357 - -
Lal9g0445 665 Pfam Elongation factor Tu domain 2 274 347 IPR004161 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0445 Lal-Chr9 2924582 2940803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0445 57 180 Eukaryotic Initiation Factors Gene Family AT3G22980 43.846 1.83e-26 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0445 K06207 - gmx:100782425 1134.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0445 9 2924582 2940803 Lal9g0445 9 2924582 2940803 ECH