Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0434 ATGGTATGTTTGGGGTTTGACATGGTTGAAAGGTTAGAACTTTGGTTGGTTAAGTGGAGGATTGCATTTGGGTGTTGTGTTTTTCTGTTGTTTCTTAGTCCTGTGGTGGGTTTGAGACCCTTAAGGGACAGAATTGGCTCATGGGGCGATGAGTGGCTTTTTTCAAGAAGAGACGGGAGTGACTTAGGTCCATTTTCCCAATGGAACATAACCGGAACATATAGAGGGACTTGGAAATTTCTAGATACCGCAAATGGCTCTTCCAAATTTCCAGACATCAGAAAAACAAATGGAAATTCTGTCATTGAGTTGGCTAGTACACCCACAAAGATAACTGGTGTACATTATGTGCAGGGGGTTGTTATATTCCATGATGTGTTCGACAAAGAATACAATGTTGGTGGTGCCCAAATCAGAATAGAAGGTGTATATATATGGCCTTTTAGACAGATTCGAATGATAGCCAACAGTGGAAAAGAGGGAGGGTTGAGTCAGGATGATGATTATCTTTTATCTAATCCATATCATCTGCTTGGAGTTTTCTCATCTCAAGTATTCCAAGAATCTTCGCGAGATAAGATGTGGAGAAGAAAATCTTCTCCATTGCATGACTTGGAAAAACATTGTAATGTTGAAATTGCCGCACAGGTTTCACGCATGCAATCATCAAAACATGAAGGGGGGCATGATTCTTTTCACCTAGAAGGGTTAATGGAGAGTCCGTCGGTGGATGATGATGGAGACTGCTTCTCTCTTTTACAGTTAAATGCATCATCTGTTAATGTTGAAGCTTACTATAATAAAGCAGTGAACTACACGTTGATGATCTCTTTCTTGCAAGTTCTTCTATTGATTCGGCAGATGGAGCACAGCAACACTCAATCTGGGGCTGCTAAGGTTTCAATATTAATGGTTGGTCAGCAAGCTATAATGGATGCTTATCTTTGCCTTTTACATCTCACTGCAGGAATACTAGTTGAATCATTATTTAATGCCTTTGCAACTGCTGCATTTTTCAAGTTTGTGGTTTTCTCAATATTTGAGATGAGATATCTCCTTGCCATCTGGAAAGCAAATAGGCCTTTGAGTAACGGTGAAGGTTGGGAGACAATGAGACGTGAGCTTTCAGTTTTATACAGCCGTTTCTATGGGATCCTCTTGGGAGGCATTCTGCTCATGTATGAATTCCATTATTATATGAGATTTATTCTTCTTCTCGTATACTCCTTCTGGATACCTCAGATAATCACCAATGTTGTTCGTGATTCACGCAAGCCATTGCATCCTCATTATATCATAGGCATAACTGTTACTCGGCTAGCAATCCCATTATATATTTTCGGTTGTCCTAACAACTTTATACGGATAGAAGCAGACCAGAGGTGGTGCGTCTATTTGACCGTATTTATTGGACTTCAAACCACAATTCTTCTACTTCAGCACTATCTTGGGTCCCGTTGGTTCATTCCTCACCAGATTCTACCTGAGAAATACAGCTATTATAGGAGGTTTGCTCAAAATACAAGTCATGCTGTAGATTGTGTTATTTGCATGACAGGCGTTGATCTTAGTCAGCGGTCTAATGATTGCATGGTAACGCCTTGTGATCATTTTTTCCACTCTGGCTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGCCCAACTTGTCGGCGCTCGCTTCCACCAGTCTGA 1695 0.4071 MVCLGFDMVERLELWLVKWRIAFGCCVFLLFLSPVVGLRPLRDRIGSWGDEWLFSRRDGSDLGPFSQWNITGTYRGTWKFLDTANGSSKFPDIRKTNGNSVIELASTPTKITGVHYVQGVVIFHDVFDKEYNVGGAQIRIEGVYIWPFRQIRMIANSGKEGGLSQDDDYLLSNPYHLLGVFSSQVFQESSRDKMWRRKSSPLHDLEKHCNVEIAAQVSRMQSSKHEGGHDSFHLEGLMESPSVDDDGDCFSLLQLNASSVNVEAYYNKAVNYTLMISFLQVLLLIRQMEHSNTQSGAAKVSILMVGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKANRPLSNGEGWETMRRELSVLYSRFYGILLGGILLMYEFHYYMRFILLLVYSFWIPQIITNVVRDSRKPLHPHYIIGITVTRLAIPLYIFGCPNNFIRIEADQRWCVYLTVFIGLQTTILLLQHYLGSRWFIPHQILPEKYSYYRRFAQNTSHAVDCVICMTGVDLSQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRSLPPV 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0434 564 Pfam Ring finger domain 513 558 IPR001841 -
Lal9g0434 564 SUPERFAMILY RING/U-box 513 563 - -
Lal9g0434 564 SMART ringv_2 513 558 IPR011016 GO:0008270
Lal9g0434 564 PANTHER RING ZINC FINGER PROTEIN 17 563 - -
Lal9g0434 564 SMART ring_2 514 557 IPR001841 -
Lal9g0434 564 PANTHER TRANSMEMBRANE E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 17 563 - -
Lal9g0434 564 ProSiteProfiles Zinc finger RING-type profile. 514 558 IPR001841 -
Lal9g0434 564 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 500 563 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0434 Lal-Chr9 2848628 2856091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0434 513 562 C3H Transcription Factor Family AT1G53010 37.255 5.05e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0434 K23788 - gmx:100802452 972.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0434 9 2848628 2856091 Lal9g0434 9 2848628 2856091 ECH