LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal9g0428	ATGGGTTGCTTTCATTCCAAGAATGCAGCTGTTGAAGACAGTAGGGAATGTATCACAAATAAATTATCATCATCTAACACAAGCTCCTTTGATGTGAATTCTTTGCGATTGAATTCCAAGAAAAGGGTTGAAGCTGTTAGAGTGAAAGATAGGTTATTAGATATCCATAGTAGTGATGTGAAAGTTTCATTACTTAACAAGAAAGCCAATAGTTCAATGAAATTGTATGATGATAAAAAAGGAGTGAATAAAAGAGAGAAACCTGAATTGGTTTTTATTAATCATCCTAGTTTTGGAAAGGTTCCAAAGGCTGTTGAAGGAGAAAATGTTGCAGCAGGATGGCCAGCTTGGCTCTCTTCTGTTGCTGGTGATGCTATCAAGGGATGGATACCAAGGAGTGCAAACACTTTTGAGAGATTACATAAAATTGGGCAAGGAACTTATAGTTCTGTTTATAAGGCACATGACCTAACTAACCAAAAGATTGTTGCTTTGAAGAGGGTACGCTTTGATAATCTTGATCCAGAGAGTGTCAAATTTATGGCAAGGGAAATCCATGTTCTGCGTAGGCTCGACCATCCAAACATAATAAAGTTGGAGGGCTTGATAACATCATCGACATCTCACAGCTTGTACCTTGTATTTGAGTATATGGAACACGATCTTACAGGACTTGCATCAAATCCTGCCATTAAGCTCTCTGAACCTCAGCTGAAATGCTACGTGCAGCAACTTCTTCGTGGATTGGATCATTGTCACAGTCATGGTGTCCTTCACCGTGACATAAAAGGCTCAAATCTTCTCATTGACAATAATGGTGTCTTGAAGATTGCCGATTTTGGTTTGGCAAGTTATTTTGACCCCCATCATAGTGTTCCAATGACTAACCGTGTAGTAACTCTGTGGTATAGACCACCAGAACTTTTACTCGGAGCGAATCATTATGGAGTTGCAGTGGATTTGTGGAGCGTTGGCTGCATACTGGGTGAACTATATACTGGCAGACCCATATTTCCAGGAAAAACGGAGGTTGAGCAGTTGCATCGGATTTTTAAACTTTGCGGCTCACCGTCTGAGGATTACTGGCTTAACTTGCGCTTGCCACATTCAACAGCATTCAGGCCTCCACACAATTATAGGCGATGTGTTGCTGAAACATTCAAGGAATATCCATATCCTGCTGTGAGGCTTACAGAGACCCTCCTTTCTGTAGATCCAGCGCATCGAGGAACAGCAGCTGCTGCTTTGAAAAGTGAGTTCTTTACATCAGAACCTCTAGCTTGTGATCCATCAAGTTTGCCAAAATATCCTCACAGCAAAGAGATTGATGCTAAATTGCAGGATGGAGCAACAAGAAGGCAAGGAGCCGTTGGAGGTAGGGAGAAAAAGGTTGGCTCAGGAGTTAGACAGGAAAAAGGACCTAGGGTATATGTCACAGCAGCTGACCCAGGCATGTCAATACAGCAAGAGCAACGTTATTCTAGCTCCAAGAACCGTAGTGGATTGCTGAAACCTCATAGAGAACCCGTGTCTGGATTTCTGGTTTTCCCTCCTCACGAAAAGTCAGAAGATGGTAAAGAAATGAGAAATAATTTATCTGGGCGTGTCTATAAAAGGCCTTCACATTCGGGTCCATTGGTTCCTGGTTATAGTTCGGCAAAGAGTGGGAGGGAAGTTGATGATGAAGCTCCTGTTTCAAACAGAGTGAACCCATCAGAACTATCTGGCCTAGTGGCAGCTAGGACTATGTCATCTCAAGATCAAGAGGAAAAACGAGTTCACTTGTACCACAGAAAACCAATTGAAGTAAGAAAATCTATGGAGTCAACTAGTCAATCAGAATCAAGAAGGCAGGATCAAAAACGGATTGCTGATCGCACTCAAATTGATAGTGGAAGGGTTCCTAGCAAAAAATTAACGCGGGATGGGCATGGGCCAGGGAGAGACATGATATATGTGTCAAGCCCATTACTGGTTCAATCTAACAATATGGATGTGATGCTCAAAGAGCATGATAGAAAGATCAGAGAGTTTTCAAGAAAAGCAAGACTAGACAAGTCAAGAGCAAGAGATAACAAAATCAGTGCCAAAAGAAAGTAG	2100	0.4186	MGCFHSKNAAVEDSRECITNKLSSSNTSSFDVNSLRLNSKKRVEAVRVKDRLLDIHSSDVKVSLLNKKANSSMKLYDDKKGVNKREKPELVFINHPSFGKVPKAVEGENVAAGWPAWLSSVAGDAIKGWIPRSANTFERLHKIGQGTYSSVYKAHDLTNQKIVALKRVRFDNLDPESVKFMAREIHVLRRLDHPNIIKLEGLITSSTSHSLYLVFEYMEHDLTGLASNPAIKLSEPQLKCYVQQLLRGLDHCHSHGVLHRDIKGSNLLIDNNGVLKIADFGLASYFDPHHSVPMTNRVVTLWYRPPELLLGANHYGVAVDLWSVGCILGELYTGRPIFPGKTEVEQLHRIFKLCGSPSEDYWLNLRLPHSTAFRPPHNYRRCVAETFKEYPYPAVRLTETLLSVDPAHRGTAAAALKSEFFTSEPLACDPSSLPKYPHSKEIDAKLQDGATRRQGAVGGREKKVGSGVRQEKGPRVYVTAADPGMSIQQEQRYSSSKNRSGLLKPHREPVSGFLVFPPHEKSEDGKEMRNNLSGRVYKRPSHSGPLVPGYSSAKSGREVDDEAPVSNRVNPSELSGLVAARTMSSQDQEEKRVHLYHRKPIEVRKSMESTSQSESRRQDQKRIADRTQIDSGRVPSKKLTRDGHGPGRDMIYVSSPLLVQSNNMDVMLKEHDRKIREFSRKARLDKSRARDNKISAKRK	699

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal9g0428	699	MobiDBLite	consensus disorder prediction	519	533	-	-
	Lal9g0428	699	MobiDBLite	consensus disorder prediction	455	469	-	-
	Lal9g0428	699	Gene3D	Phosphorylase Kinase; domain 1	124	219	-	-
	Lal9g0428	699	MobiDBLite	consensus disorder prediction	486	573	-	-
	Lal9g0428	699	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	257	269	IPR008271	GO:0004672\|GO:0006468
	Lal9g0428	699	ProSiteProfiles	Protein kinase domain profile.	137	421	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lal9g0428	699	Gene3D	Transferase(Phosphotransferase) domain 1	220	458	-	-
	Lal9g0428	699	MobiDBLite	consensus disorder prediction	599	648	-	-
	Lal9g0428	699	SMART	serkin_6	137	421	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lal9g0428	699	ProSitePatterns	Protein kinases ATP-binding region signature.	143	166	IPR017441	GO:0005524
	Lal9g0428	699	CDD	STKc_CDK9_like	137	421	-	-
	Lal9g0428	699	Pfam	Protein kinase domain	137	421	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lal9g0428	699	MobiDBLite	consensus disorder prediction	448	471	-	-
	Lal9g0428	699	MobiDBLite	consensus disorder prediction	599	645	-	-
	Lal9g0428	699	MobiDBLite	consensus disorder prediction	486	500	-	-
	Lal9g0428	699	MobiDBLite	consensus disorder prediction	679	699	-	-
	Lal9g0428	699	PANTHER	CYCLIN-DEPENDENT KINASE	42	685	-	-
	Lal9g0428	699	SUPERFAMILY	Protein kinase-like (PK-like)	130	427	IPR011009	-
	Lal9g0428	699	PANTHER	CELL DIVISION PROTEIN KINASE	42	685	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal9g0428	Lal-Chr9	2815419	2822466	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal9g0428	129	462	Core Cell Cycle Gene Families	AT5G10270	48.000	5.15e-108	335

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Lal9g0428		Pkinase	3.3e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal9g0428	-		-	gmx:100807590	993.416