Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0423 ATGCAGCACCACCGTAGCTCCGCCGTGCTGAATCTGAGCTTGCTCTGTTATTGTTTGGTGCTTAAACAACTCGTGCTGTTATGTGGCGCGGAGGAACAACCTCAGCACCGTCTACCCGACCTGCATTGGTATCCTGGAACCGCCACCTGGTACGGCGAACCCGAAGGCGACGGCAGCACCGGGGGGGCATGTGGGTATGGTACGATGGTGGATGTGAAACCGTTGAGGGCAAGGGTAGGGGCGGTGGGACCGGTGCTGTTCATGAAAGGGGAAGGGTGCGGTGCGTGTTATAAGGTGAAGTGTTTGGACAAAAACATATGTACGAGGCGAGCAGTGACGGTTATAATCACGGATGAGTGTCCAGGATGTCCCTCCGACCGAACCCACTTTGATCTCAGTGGTGCTGCATTTGGCCGCATGGCTATTACCGGAGAGAATGGTCAACTCAGAAACCGTGGTGAAATTCCAGTCATTTATCGAAGAACCCCATGTAAATACCCGGGTAAAAAAATTGCCTTCCATGTTAATGAAGGTTCCACACCTTTTTGGCTATCACTTCTGGTTGAGTTTGAGGATGCTGAGGGAGATATTGGCTCCATGCATATACGAGAAGCAAGGTCTAGTGAGTGGGTGCAGATGAATCATTTATGGGGTGCAAATTGGTTCATTATTGGAGGACCTTTAAGAGGACCATTCTCTGTTAAACTAAGCACTTCCACTGGTAGAACCCTCTCTGCCAGAGATGTTGTTCCAGGCAATTGGGTTCCAAAGGCCACTTACACCTCTCGTCTAAATTTCTACCCTTAG 807 0.5031 MQHHRSSAVLNLSLLCYCLVLKQLVLLCGAEEQPQHRLPDLHWYPGTATWYGEPEGDGSTGGACGYGTMVDVKPLRARVGAVGPVLFMKGEGCGACYKVKCLDKNICTRRAVTVIITDECPGCPSDRTHFDLSGAAFGRMAITGENGQLRNRGEIPVIYRRTPCKYPGKKIAFHVNEGSTPFWLSLLVEFEDAEGDIGSMHIREARSSEWVQMNHLWGANWFIIGGPLRGPFSVKLSTSTGRTLSARDVVPGNWVPKATYTSRLNFYP 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0423 268 Gene3D - 165 263 IPR036749 -
Lal9g0423 268 Pfam Lytic transglycolase 84 158 IPR009009 -
Lal9g0423 268 Gene3D - 31 164 IPR036908 -
Lal9g0423 268 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 61 169 IPR007112 -
Lal9g0423 268 SUPERFAMILY PHL pollen allergen 169 262 IPR036749 -
Lal9g0423 268 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 182 262 IPR007117 -
Lal9g0423 268 PRINTS Expansin/Lol pI family signature 42 57 IPR007118 GO:0005576
Lal9g0423 268 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Lal9g0423 268 PRINTS Expansin/Lol pI family signature 83 101 IPR007118 GO:0005576
Lal9g0423 268 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576
Lal9g0423 268 PRINTS Expansin/Lol pI family signature 210 224 IPR007118 GO:0005576
Lal9g0423 268 PRINTS Expansin/Lol pI family signature 248 262 IPR007118 GO:0005576
Lal9g0423 268 Pfam Expansin C-terminal domain 171 251 IPR007117 -
Lal9g0423 268 PANTHER EXPANSIN-B3 8 268 - -
Lal9g0423 268 PRINTS Major pollen allergen Lol pI signature 119 134 IPR005795 GO:0005576|GO:0019953
Lal9g0423 268 PRINTS Major pollen allergen Lol pI signature 141 156 IPR005795 GO:0005576|GO:0019953
Lal9g0423 268 PRINTS Major pollen allergen Lol pI signature 173 188 IPR005795 GO:0005576|GO:0019953
Lal9g0423 268 PRINTS Major pollen allergen Lol pI signature 189 204 IPR005795 GO:0005576|GO:0019953
Lal9g0423 268 PRINTS Major pollen allergen Lol pI signature 238 255 IPR005795 GO:0005576|GO:0019953
Lal9g0423 268 SMART dpbb_1 79 159 IPR007112 -
Lal9g0423 268 SUPERFAMILY Barwin-like endoglucanases 42 168 IPR036908 -
Lal9g0423 268 PANTHER EXPANSIN-LIKE PROTEIN B1 8 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0423 Lal-Chr9 2783663 2787157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0423 14 206 Expansin Gene Family AT4G28250 69.948 3.22e-95 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0423 K20628 - gmx:100804525 483.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0423 9 2783663 2787157 Lal9g0423 9 2783663 2787157 ECH