Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0402 ATGATAGAATCTGTCAGGTTCAAAGAAGATGATGCACAAGCCTTAGATATTCCACATTTTCATTTGGAAAGTATTCTTGATGCTACTAATAACTTCGCAAATGTTAACAAGCTTGGACAAGGGGGGTTTGGTCCTGTCTACAAGGGAAAATTTCCTGGAGGACAAGAAATGGCAGTGAAGAGACTCTCAAGTTGCTCTGGACAAGGTTTAGAAGAATTCAAGAATGAAGTTGTGTTGATCGCCAAGCTTCAACATCGGAACCTAGTTAAACTTCTTGGTTATTGTCTTGAAGGAGATGAGAAGATGTTAATATATGAATACATGCCAAATAGAAGCTTGGATGCTTTCATATTTGATCGAAAGCGGTGTGGTCTATTAGACTGGGATATGCGCCTCAAGATTATTCTGGGTATTGCTCGAGGGCTCCTTTATCTCCATGAAGATTCTAGATTGAGGATTATTCACCGGGACTTGAAAGCAAGCAATATTCTATTAGATGAAGAGATGAATCCTAAAATCTCAGACTTTGGCTTAGCCAGGATATTTGGAGGAAAAGAGACAGCAGCAAACACAGAAAGAGTGGTTGGAACTTATGGGTATATGTCTCCAGAGTATGCACTTGATGGTCATTTTTCAGTGAAGTCTGATGTATTTAGCTTTGGTGTGGTGGTACTTGAGATTATTAGTGGAAAAAGGAACACTGGATTTTATCAAGTAGAACATGAATTGAGTCTTCTAGGATATGCATGCCATTTATGGAAAGTAGACAGGGTATTGGACTTCATGGACCAAACACTAAGTGATACATGCAATGCAGATGAATGCTTGAAGTATGTGAATGTGGGACTTTTATGTGTACAAGAAGATCCAAATGAACGTCCAACCATGTCAAATGTGGTTTTCATGTTAAGTAGTGAAACAAATACTCTTCCAAGTCCTAAGGAACCAGCCTTTGTTCTAAGGAGATGCCTTTCTAGCAGAGCATCTACTTCAAGTAAAATGGAAACATTTTCACGTAATGAATTGACAGTTACTTTAGAAAATGGCCGCTAG 1053 0.3875 MIESVRFKEDDAQALDIPHFHLESILDATNNFANVNKLGQGGFGPVYKGKFPGGQEMAVKRLSSCSGQGLEEFKNEVVLIAKLQHRNLVKLLGYCLEGDEKMLIYEYMPNRSLDAFIFDRKRCGLLDWDMRLKIILGIARGLLYLHEDSRLRIIHRDLKASNILLDEEMNPKISDFGLARIFGGKETAANTERVVGTYGYMSPEYALDGHFSVKSDVFSFGVVVLEIISGKRNTGFYQVEHELSLLGYACHLWKVDRVLDFMDQTLSDTCNADECLKYVNVGLLCVQEDPNERPTMSNVVFMLSSETNTLPSPKEPAFVLRRCLSSRASTSSKMETFSRNELTVTLENGR 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0402 350 Gene3D Phosphorylase Kinase; domain 1 3 107 - -
Lal9g0402 350 Pfam Domain of unknown function (DUF3403) 305 350 IPR021820 GO:0004674
Lal9g0402 350 SMART serkin_6 32 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal9g0402 350 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 16 345 - -
Lal9g0402 350 SUPERFAMILY Protein kinase-like (PK-like) 17 333 IPR011009 -
Lal9g0402 350 Gene3D Transferase(Phosphotransferase) domain 1 108 315 - -
Lal9g0402 350 CDD STKc_IRAK 38 303 - -
Lal9g0402 350 Pfam Protein tyrosine and serine/threonine kinase 35 301 IPR001245 GO:0004672|GO:0006468
Lal9g0402 350 ProSitePatterns Serine/Threonine protein kinases active-site signature. 153 165 IPR008271 GO:0004672|GO:0006468
Lal9g0402 350 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 16 345 - -
Lal9g0402 350 ProSiteProfiles Protein kinase domain profile. 32 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0402 Lal-Chr9 2665319 2669565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0402 5 321 Receptor kinase-like Gene Family AT4G23230 57.716 9.96e-131 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lal9g0402 PK_Tyr_Ser-Thr 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0402 - - gmx:100775297 634.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0826 8 5929790 5935656 Lal9g0402 9 2665319 2669565 PCT