Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0387 ATGTTCCAGTCAAACCAGTTTCACAACACATTGGATAACATGGCTCAGAACACTTCCAATAGCGACATCCCTCCAAACCGCGAAGATGAGTTGGATAGTGGTAACAAGTCTGGTAGCGAAAACCAAGATGGTGCATCTGGTGAAGACCAAGAACCTAGCGCAAAGAAGAAGCGCTATCACCGCCACACCCAACACCAGATCCAAGAAATGGAAGCTTTCTTCAAGGAGTGTCCACACCCTGATGACAAGCAAAGGAAGGAACTGAGCCGGGAGTTAGGGTTAGAGCCATTGCAGGTTAAGTTTTGGTTTCAGAACAAGCGCACTCAGATGAAGACCCAAACTGAACGCCATGAGAACACACAGCTTAGAACCGAAAACGACAAGCTTAGAGCTGAAAACATGAGGTATAGGGAAGCTCTTAGCAATGCCGTGTGTCCTAATTGTGGTGGACCAACTGCTATGGGCGAAATGTCATTTGATGAACATCACCTCAGGCTTGAAAATGCAAGGCTAAGAGAAGAGATTGATCGCATTTCTGGAATTGCTGCTAAGTACGTGGGAAAGCCAATGGTGAATTATCCAAACCTTTCCCCTTCTCTTCCTCCACGTCCACTAGAACTTGGAGCTAATGGCGGTTATGGTGGCCATCCAGCTGGTATTCGCGGCGGCGATATATATGGAGGTGATGGAGATCTTGTAAGGTCAATTAGTGGACCCAGTGAAGCTGATAAGCCAATGATAATTGAGCTTGCTGTTGCAGCTATGGAGGAGCTCATTGGGATGGCACAGATGGGTGAGCCTCTTTGGTTGACCACTCCGGATGGCACTAAAATTGTGCTAAATGAGGATGAATACATTAGGTCCTTTCCTCGAGGAATTGGACCAAAACCAAATGGCTTTAAATGTGAAGCTTCTCGAGAAACTACTGTTGTTATCATGAACCATGTTAATCTTGTTGAGATCCTCATGGATGTGAATCAGTGGTCCACTGTGTTCTCTGGTATAGTCTCAAGAGCCATGACTCTGGAAGTGCTATCAACGGGGGTAGCCGGGAACTACAATGGTGCCTTACAAGTTATGACAGCAGAACTACAAGTACCTTCACCTCTTGTGCCAACTCGTGAAAGCTATTTTGTACGGTATTGTAAACAACATGTGGATGGGACTTGGGCAGTAGTGGATGTATCTTTGGATAATTTGCGCCCTAATCCTTCAGCTAGATGTAGAAGAAGGCCTTCTGGTTGTTTGATTCAAGAAATGCCCAATGGCTATTCAAGGGTCACATGGGTGGAACATGTGGAAGTAGATGATAGAGGTGTTCATAATCTTTACAAGCAGCTTGTTAGCTCTGGACATGCATTTGGTGCAAAACGTTGGGTTGCAACTTTGGGTAGACAATGTGAAAGGCTTGCTAGTGCCATGGCAACAAACATACCCACAGGAGAAGTTGGCGTGATAACAAACCGAGAAGGAAGGAAGAGTATGCTGAAACTGGCTGAGAGAATGGTTATAAGCTTTTGCGCTGGAGTGAGTGCTTCTACTGCTCATACATGGACTACACTGCAAAGTGGAACTGGTGCTGATGATGTAAGGGTCATGACTCGAAAGAGTGTTGATGACCCAGGAAGACCCCCTGGTATTGTTCTAAGTGCTGCAACTTCTTTTTGGCTTCCAGTTCCACCAAGAAGAGTTTTTGACTTTCTTCGTGATGAGAATTCCAGAAATAAGTGGGATATTCTTTCAAATGGTGGAGCTGTCCAAGAAATGGCACACATTGCAAATGGACAAGAAACTGGAAATTGTGTTTCTCTACTTAGAGTGAACAGTGCCAATTCAAGCCAGAGTAACATGTTGATATTACAAGAGAGTTGCATGGATTCAACAGGATCTTTTGTGATCTATGCTCCAGTAGATATTGTTGCAATGAATGTTGTTCTAAATGGAGGAGACCCAGAATATGTAGCTCTTCTTCCTTCAGGATTTGCAATCCTCCCAGATGGGACCACAACACATGGAAGTGGCATTGGTGAAACCGGACCTGGTGGATCACTCTTGACTGTGGCATTTCAAATATTGGTTGATTCAGCTCCAACTGCTAGGCTTTCTCTTGGATCTGTTGCTACTGTTAATAATCTTATTGCTTGTACTGTTGAGAGAATTAAGGAGGATAAAGGGGATGGCATTGTGGAAAATCTAAAGGTGATGAGGAACTTCGGCTTATTCATAAAGATGGGGAGGAGTCAAGAACGCACCTTGCATGATCCATTCTCAACACCCCTAAGAGTGTTGAGAGAATTAAGGTTCGGGAATTGA 2313 0.4453 MFQSNQFHNTLDNMAQNTSNSDIPPNREDELDSGNKSGSENQDGASGEDQEPSAKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQTERHENTQLRTENDKLRAENMRYREALSNAVCPNCGGPTAMGEMSFDEHHLRLENARLREEIDRISGIAAKYVGKPMVNYPNLSPSLPPRPLELGANGGYGGHPAGIRGGDIYGGDGDLVRSISGPSEADKPMIIELAVAAMEELIGMAQMGEPLWLTTPDGTKIVLNEDEYIRSFPRGIGPKPNGFKCEASRETTVVIMNHVNLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHVDGTWAVVDVSLDNLRPNPSARCRRRPSGCLIQEMPNGYSRVTWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWVATLGRQCERLASAMATNIPTGEVGVITNREGRKSMLKLAERMVISFCAGVSASTAHTWTTLQSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPRRVFDFLRDENSRNKWDILSNGGAVQEMAHIANGQETGNCVSLLRVNSANSSQSNMLILQESCMDSTGSFVIYAPVDIVAMNVVLNGGDPEYVALLPSGFAILPDGTTTHGSGIGETGPGGSLLTVAFQILVDSAPTARLSLGSVATVNNLIACTVERIKEDKGDGIVENLKVMRNFGLFIKMGRSQERTLHDPFSTPLRVLRELRFGN 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0387 770 Gene3D - 41 130 - -
Lal9g0387 770 SMART HOX_1 54 117 IPR001356 GO:0003677
Lal9g0387 770 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 12 722 IPR042160 -
Lal9g0387 770 Pfam Homeodomain 56 111 IPR001356 GO:0003677
Lal9g0387 770 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Lal9g0387 770 MobiDBLite consensus disorder prediction 1 65 - -
Lal9g0387 770 CDD START_ArGLABRA2_like 244 468 - -
Lal9g0387 770 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 12 722 - -
Lal9g0387 770 MobiDBLite consensus disorder prediction 1 24 - -
Lal9g0387 770 Gene3D - 291 461 IPR023393 -
Lal9g0387 770 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Lal9g0387 770 SUPERFAMILY Bet v1-like 242 471 - -
Lal9g0387 770 Pfam START domain 250 469 IPR002913 GO:0008289
Lal9g0387 770 ProSiteProfiles START domain profile. 240 472 IPR002913 GO:0008289
Lal9g0387 770 SMART START_1 249 469 IPR002913 GO:0008289
Lal9g0387 770 CDD homeodomain 56 113 IPR001356 GO:0003677
Lal9g0387 770 Coils Coil 112 139 - -
Lal9g0387 770 SUPERFAMILY Homeodomain-like 45 113 IPR009057 -
Lal9g0387 770 SUPERFAMILY Bet v1-like 490 722 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0387 Lal-Chr9 2559705 2566312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0387 1 721 Homeobox Transcription Factor Family AT1G05230 76.197 0.0 1125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal9g0387 START 3.5e-59 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0387 K09338 - gmx:100782260 1249.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0387 9 2559705 2566312 Lal9g0387 9 2559705 2566312 ECH
Lal1g0492 1 3113759 3118186 Lal9g0387 9 2559705 2566312 LSH
Lal2g0415 2 2482576 2488061 Lal9g0387 9 2559705 2566312 LSH
Lal25g0047 25 340502 347138 Lal9g0387 9 2559705 2566312 PCT
Lal9g0387 9 2559705 2566312 Lal25g0047 25 340502 347138 PCT