Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0385 ATGGTTAAGGGCAGAACATTGTTGTTCTTGGTTTTTGGCTTGTGGATTTCCACAGAAGTGGTGGGTATGACAGAACCTTCACAATCTACCACTGTGAATTCTACTGTGTCTTCAAGACCGAAGGTTGTGAAAATTGGAGCTCTTCTTACTTATAATTCTGTCATTGGAAGATCAGCTAAACCCGCAATTATGGCTGCCATTGAGGATGTTAATTCTAATAGGAATGTTCTCCCTGGCATTGAACTTCAAGTTATTGTACATGATACAAATTGCAGTGGTTTCCTTGGCACAGTGGAAGTAAAGAAGTGGACAAACTTGATTAATGTTGTTGATCATGTAGCTCTGCAGTTGATGAAGAATGAAGTGGTTGCTGCTGTTGGTCCACAATCTTCAGGAATAGCTCATGTTGTGTCACATGTGGCTAATGAACTACATGTACCTCTTCTATCATTTGGGGCAACTGACCCAACTCTATCTGCTCTACAATACCCCTATTTCATCAGGACTACCCAGAGTGACTATTACCAGATGCATGCAATTGCAGATTTTATTGAGTATCACGGGTGGAGGGAGGTCATTGCCATATTTGTAGATGATGATAATGGAAGAAATGGAGTTGCTGCATTAGGTGATGCACTGTCAAAGAAACGCGCCAGGATCTCTTACAAGGCTGCATTCCCTCCTGTAGCCTCACAAAGTGATATCAGTGACTTGTTAAATGAAGTAAACTTAATGGAATCAAGGGTCTATGTTCTACATGTTAATCCTGATTCTGGTTTGACAATCTTTTCCATTGCGAAGAAGCTACGAATGATGAGCGCTGGCTATGTTTGGATTGCAACAGATTGGCTTCCTTCAATGCTGGATTCATTAGTTCGAGCTGATACAGACACAATGAATATTTTACAAGGGGTTGTGGCTTTTCGTCATCACATTCCTGATACTGATCTCAAGAAGAGTTTTATCTCTAGGCTAAAAAACCTTAAAGACTACGACACTGAAAGCTTCAATTCTTATGCATTTTATGCATATGATTCTGTTTGGTTAGCAGCTCATGCCCTTGATGTTTTTCTCAATGAAGGTGGGAATATATCTTTCTCTAGTGACCCCAGGTTGCGTGACACGAAAGGAAGTGTGCTGAATTTAGCAGCACTTCGCACTTTTGATGGGGGTGATCAGTTTCTCCAGACAATTTTGCGAATGAACTTTACTGGTTTGAGTGGTAAAATTGAATTTGATCATGATAAGAATTTAATTAATCCAGCATATGATATTCTAAATATTGGTGGAACTGGATCGCGTAGTATCGGTTATTGGTCTAATCACTCTGGACTGTCAGTATTACTTCTTGAAACTGTATACATGAAAAAATCATCCAACACTTCAACAAGCAATCAAAAGCTGCACAGTGTGATATGGCCTGGAGAAATTACAACTACACCTAAGGGATGGGTATTCCCTAACAATGGTAAGCCACTGCGAATAGCAGTGCCAAACCGAGTAAGTTATAAGGAGTTTGTTGCTAAAGACAAGAACCCTCCAGGGGTACAAGGCTTTTGCATTGATGTCTTTGAAGCAGCCTTAAAGCTGTTGCCTTATCCTGTCCCCCGACAATATATGCTATATGGAAATGGTGATAGGAATCCTAACTATAACAACCTTGTGGATCAGGTTGCACAAAATAACTATGATGCAGCTGTTGGAGATGTTACAATAGTGACAAACAGGACTAGGTTTGTGGATTTTACTCAACCTTTCATGGGATCAGGGCTTGTTGTTGTTGTTTCTGTCAAAGAGGATAAGTCAAGCCCTTGGGTTTTCCTTGAGCCATTCACTCCTCAAATGTGGTGTATCACTGGTTCTTTCGCTCTTTTTGTGGGAACTGTTGTGTGGATTCTTGAGCACCGATTCAATGAAGAGTTCCGTGGTTCACCAAGGACACAACTTATAACAGTCTTTTGGTTAATTGTCAATGACATTGCTTCCATTGTTTGTCATAGCATATCATACACAAAAGGGGCATGTCCAGAACTAAGGGTGTGCTTGAGACAAGTGGCAGTACCAGACAACTCAAGTGCACTGGGCAAAAAAAATATGACTTTTGTATTGTCCTATAAGTTCAGTCTCTCAACAATGATTTTCTCACACAGAGAGAACACTGTGAGTACTCTTGGAAGATTAGTGCTAATCATGTGGCTTTTTGTGGTGTTAATTATCAATTCAAGCTACACAGCTAGCTTGACATCCATCCTCACAGTGCAGCAACTATCATCACAAATTGAAGGAATAGACAGCTTGATCTCAAGTACTCAACCTATTGGAATTCAAGACGGGTCATTTGCGCGCAAGTATCTAGTAGAGGAACTCCGTATACCAGAATCAAGGATAGTAACTTTGAAAAATATGCAAGGTTATATCGATGCCCTCCAGCGTGGACCGAAACATGGAGGGGTTGTGGCCGTCGTTGATGAGCTTCCTTATATTGAGACCTTGATGTCCAGCACTGACTGTAAGTTCAGAACTGTCGGGCAGGAATTCACTAAAAGTGGCTGGGGATTTGCATTCAGAAGGGACTCTCCCCTTGCTGTTGATTTGTCAACTGCTATTCTTCAACTCTCAGAGAATGGTGATCTGCAAAGGATACATGACAAATGGCTTAATAAAATGGAGTGTTCCAATGATGCTGATCCAAACAAACTATCTTTGAGAAGCTTCTGGGTCCTCTTTCTTATATTTGCTATTGTAAGTGTCCTTGCAATAATTATATTCTTTGTTAGAGTGTTGTGCCAATATACCAAGTTCAGTCCAGAGCCTGAGGAGGTTGGTGATGAAATTCAGCCAACCAAGTATAGAAGAACATGCAAGACTCATAGCTTCAAGGATTTGATAGTTTTTGTAGATAAAAAGGAAGCAGAAATTAAAGAGATACTTAGGGAAAAGAGGGAAAAAAGGAGACGTAGCAAAAGCTTGGATGGGCTATTTAATTCACCCACCTAA 2997 0.4054 MVKGRTLLFLVFGLWISTEVVGMTEPSQSTTVNSTVSSRPKVVKIGALLTYNSVIGRSAKPAIMAAIEDVNSNRNVLPGIELQVIVHDTNCSGFLGTVEVKKWTNLINVVDHVALQLMKNEVVAAVGPQSSGIAHVVSHVANELHVPLLSFGATDPTLSALQYPYFIRTTQSDYYQMHAIADFIEYHGWREVIAIFVDDDNGRNGVAALGDALSKKRARISYKAAFPPVASQSDISDLLNEVNLMESRVYVLHVNPDSGLTIFSIAKKLRMMSAGYVWIATDWLPSMLDSLVRADTDTMNILQGVVAFRHHIPDTDLKKSFISRLKNLKDYDTESFNSYAFYAYDSVWLAAHALDVFLNEGGNISFSSDPRLRDTKGSVLNLAALRTFDGGDQFLQTILRMNFTGLSGKIEFDHDKNLINPAYDILNIGGTGSRSIGYWSNHSGLSVLLLETVYMKKSSNTSTSNQKLHSVIWPGEITTTPKGWVFPNNGKPLRIAVPNRVSYKEFVAKDKNPPGVQGFCIDVFEAALKLLPYPVPRQYMLYGNGDRNPNYNNLVDQVAQNNYDAAVGDVTIVTNRTRFVDFTQPFMGSGLVVVVSVKEDKSSPWVFLEPFTPQMWCITGSFALFVGTVVWILEHRFNEEFRGSPRTQLITVFWLIVNDIASIVCHSISYTKGACPELRVCLRQVAVPDNSSALGKKNMTFVLSYKFSLSTMIFSHRENTVSTLGRLVLIMWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISSTQPIGIQDGSFARKYLVEELRIPESRIVTLKNMQGYIDALQRGPKHGGVVAVVDELPYIETLMSSTDCKFRTVGQEFTKSGWGFAFRRDSPLAVDLSTAILQLSENGDLQRIHDKWLNKMECSNDADPNKLSLRSFWVLFLIFAIVSVLAIIIFFVRVLCQYTKFSPEPEEVGDEIQPTKYRRTCKTHSFKDLIVFVDKKEAEIKEILREKREKRRRSKSLDGLFNSPT 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0385 998 CDD PBP1_GABAb_receptor_plant 44 449 IPR044440 -
Lal9g0385 998 Coils Coil 966 986 - -
Lal9g0385 998 PRINTS Metabotropic glutamate GPCR signature 56 71 IPR000337 GO:0004930|GO:0007186|GO:0016021
Lal9g0385 998 PRINTS Metabotropic glutamate GPCR signature 71 90 IPR000337 GO:0004930|GO:0007186|GO:0016021
Lal9g0385 998 PRINTS Metabotropic glutamate GPCR signature 125 151 IPR000337 GO:0004930|GO:0007186|GO:0016021
Lal9g0385 998 PRINTS Metabotropic glutamate GPCR signature 157 176 IPR000337 GO:0004930|GO:0007186|GO:0016021
Lal9g0385 998 PRINTS Metabotropic glutamate GPCR signature 176 192 IPR000337 GO:0004930|GO:0007186|GO:0016021
Lal9g0385 998 PRINTS Metabotropic glutamate GPCR signature 192 209 IPR000337 GO:0004930|GO:0007186|GO:0016021
Lal9g0385 998 PIRSF IGluLR_plant 686 994 IPR017103 -
Lal9g0385 998 PIRSF IGluLR_plant 4 662 IPR017103 -
Lal9g0385 998 Gene3D - 172 445 - -
Lal9g0385 998 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 978 - -
Lal9g0385 998 Gene3D - 488 603 - -
Lal9g0385 998 Pfam Ligand-gated ion channel 888 914 IPR001320 GO:0015276|GO:0016020
Lal9g0385 998 Pfam Receptor family ligand binding region 60 429 IPR001828 -
Lal9g0385 998 Gene3D - 62 420 - -
Lal9g0385 998 SUPERFAMILY Periplasmic binding protein-like II 470 887 - -
Lal9g0385 998 Gene3D - 777 890 - -
Lal9g0385 998 PANTHER GLUTAMATE RECEPTOR 3.4 32 978 - -
Lal9g0385 998 SMART GluR_14 494 888 IPR001320 GO:0015276|GO:0016020
Lal9g0385 998 SUPERFAMILY Periplasmic binding protein-like I 38 485 IPR028082 -
Lal9g0385 998 Gene3D - 604 776 - -
Lal9g0385 998 Pfam Bacterial extracellular solute-binding proteins, family 3 503 887 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0385 Lal-Chr9 2543834 2549545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0385 39 856 Ion Channels AT1G05200 62.103 0.0 1075
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0385 K05387 - gmx:100802782 1398.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0385 9 2543834 2549545 Lal9g0385 9 2543834 2549545 ECH
Lal9g0385 9 2543834 2549545 Lal25g0048 25 347623 352789 PCT
Lal9g0385 9 2543834 2549545 Lal10g1296 10 18999932 19003564 PCT
Lal9g0385 9 2543834 2549545 Lal8g0038 8 338652 344515 PCT