Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0367 ATGAAGTGGAGTAGAGGCCACACAGTAGGGCGTGGCTCAACAGCCACCGTCTCCACCGCCACCAGCTGTATCGATATCTTTGCTGTCAAGTCAACAAAGCTATCTAGTTCGGAGACTTTGCAGAGAGAACAAGAAATTCTATCTTCTCTATCCTCACCTTATATAGTTACCTATAAAGGGTGTGATATTACAATGGAGAATAACATCCTCATGTACAATCTATTCATGGAGTATATGCCATTTGGCACGCTTATTCAGGCAACTCAACGGCACGGTGGCCGGCTCATTGAGCCATTGCTTGCTTGCTACACAAGGCAAGTTTTACAAGGGATAGAGTATTTGCATTCAATAGGGTTGGTGCATTGTGACATCAAGGGTGCCAATATCTTGATTGGTGAAGATGGGGTGGCCAAAGTTGGTGATCTTGGGTGCGCTAAAAGTGTCAATGATGATGTCAAAGACGGCTCAATTAGTGGTACGCCGATGTTTATGGCACCGGAGGTGGCGCGTGGCGAAGAACAAAGCTATCCTAGTGATATTTGGTCACTTGGATGTACTATGATTGAAATGGCTATTGGAGATTCACCATGGCCTAATGTGGCAGACCCTTTTTCAGTGCTTTACCATATTGCATATTCCAATGAAGTGCCTGAGATTCCAAGTTTTCTATCTGAGGAAGCAAAGCATTTCTTAGGGAAGTGTCTTAAAAGGAATCCACAAGAGAGGTGGACAGCTAGTCAACTTTTGAGACATCCATTTCTTGTGGAAATCAATTCCAATGCAAAGCAAATTGAGGAACATAATTCAAGTTCCCCAACTAGTATTCTTGAGCAAGGTTTTTGGAATTATGTGGAGGAACCAGGACTAGTTGGCAATTTGATTCACATGACATGTTATGAGAATTCCCCCGCTGGCAGGGTCAGAAGTTTAGCTATGTGTTCAGGGGAGCCCTGTTTGGCATGGCATGATGATGAGAATTGGATCACAACCAGAGAGAATGAGAATATGGATGAAGTTCATGCATTTGGCAATTGTGGGTCAGAGACAGCATCATCTACTAGTGATGTTTTGGCTCTGGATGAGTTGGTAAAAAGCAACGTCAGTGGTAGAATTAGTGGGCAATTTTGTAAGGGTAACAAATGTAGGGATGGTAGTAGTGTTGTAGTTAGTAATAATCTCAATTTTGAGAGAGGCATTGATAAGATGTTACCACTCATTTCAACATTGGATATTTTATAA 1239 0.4245 MKWSRGHTVGRGSTATVSTATSCIDIFAVKSTKLSSSETLQREQEILSSLSSPYIVTYKGCDITMENNILMYNLFMEYMPFGTLIQATQRHGGRLIEPLLACYTRQVLQGIEYLHSIGLVHCDIKGANILIGEDGVAKVGDLGCAKSVNDDVKDGSISGTPMFMAPEVARGEEQSYPSDIWSLGCTMIEMAIGDSPWPNVADPFSVLYHIAYSNEVPEIPSFLSEEAKHFLGKCLKRNPQERWTASQLLRHPFLVEINSNAKQIEEHNSSSPTSILEQGFWNYVEEPGLVGNLIHMTCYENSPAGRVRSLAMCSGEPCLAWHDDENWITTRENENMDEVHAFGNCGSETASSTSDVLALDELVKSNVSGRISGQFCKGNKCRDGSSVVVSNNLNFERGIDKMLPLISTLDIL 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0367 412 SMART serkin_6 3 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal9g0367 412 Gene3D Transferase(Phosphotransferase) domain 1 2 286 - -
Lal9g0367 412 ProSitePatterns Protein kinases ATP-binding region signature. 9 30 IPR017441 GO:0005524
Lal9g0367 412 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Lal9g0367 412 ProSiteProfiles Protein kinase domain profile. 3 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal9g0367 412 PANTHER MAP KINASE KINASE KINASE 1 342 - -
Lal9g0367 412 CDD STKc_MAPKKK 2 254 - -
Lal9g0367 412 Pfam Protein kinase domain 5 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal9g0367 412 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 342 - -
Lal9g0367 412 SUPERFAMILY Protein kinase-like (PK-like) 3 278 IPR011009 -
Lal9g0367 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0367 Lal-Chr9 2447080 2448318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0367 1 333 MAP Kinase Kinase Kinase AT1G05100 49.128 4.43e-106 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lal9g0367 Pkinase 2e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0367 K20716 - gmx:100819665 490.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0367 9 2447080 2448318 Lal9g0367 9 2447080 2448318 ECH
Lal9g0367 9 2447080 2448318 Lal5g1470 5 17162773 17164357 ECH
Lal9g0367 9 2447080 2448318 Lal11g0430 11 3228729 3230330 ECH
Lal25g0057 25 409954 410994 Lal9g0367 9 2447080 2448318 PCT
Lal8g0035 8 309994 313260 Lal9g0367 9 2447080 2448318 PCT
Lal9g0367 9 2447080 2448318 Lal25g0057 25 409954 410994 PCT
Lal9g0367 9 2447080 2448318 Lal8g0035 8 309994 313260 PCT