Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0354 ATGTTTGGGAGAGCACCGAAGAAGAGTGATAACAGCAGATACTATGAAATTCTTGGCGTTTCCAAGAGTGCTTCTCAGGATGATCTCAAAAAAGCTTACAAGAAAGCCGCAATTAAGAATCACCCCGATAAGGGTGGTGATCCTGAAAAGGTGCTAGTTTCTAGTTTCAGTGTCCATGCTCTTTCAGTAGCCACTGAAGCTAGGTTCAAAGAGCTGGCCCAAGCTTATGAGGTTCTGAGTGACCCGGAGAAGCGTGAGATATATGATCAATATGGTGAAGATGCTCTTAAGGAAGGAATGGGTGGCGGCGGTGGTGGACATGACCCCTTTGACATATTCAGTTCATTCTTCGGTGGGGGTGGAAATCCATTTGGTGGTGGTAGCAGTCGAGGACGAAGGCAGAGACGTGGAGAAGACGTTGTTCACCCTCTCAAGGTCTCCTTGGAGGACCTTTACAGTGGGACATCTAAGAAGCTCTCCCTCTCTAGAAATGTCATATGCTCAAAGTGCAGTGGGAAAGGGTCTAAGTCTGGTGCTTCCATGAAGTGTGCCGGTTGTCAAGGAACTGGTATGAAGGTTTCTATCAGGCACCTTGGTCCTTCCATGATTCAGCAAATGCAACATGCTTGCAATGAATGTAAGGGTACTGGAGAAACCATCAATGACAGGGACCGCTGCCCTCAGTGCAAGGGAGAGAAGGTTGTTCAAGAGAAGAAAGTACTTGAAGTTATTGTGGAGAAGGGGATGCAGAATGGCCAGAAGATTACATTTCCTGGTGAAGCCGACGAAGCTCCAGACACAGTTACTGGGGATATTGTCTTTGTGCTTCAGCAGAAGGAACATCCCAAGTTCAAGAGAAAGGCAGAAGATCTGATTGTGGAGCACACTTTGTCCCTCACTGATGCTTTATGTGGCTTCCAATTTGTGCTGGCTCACTTGGATGGCCGTCAGCTCCTGATTAAATCCAACCCTGGTGAAGTTATCAAGCCTGATTCATTCAAGGCAATTAACGATGAGGGAATGCCATTGTATCAGAGGCCATTCATGAAGGGGAAGCTTTACATTCACTTCAACGTGGAGTTCCCTGAATCTCTAAGTCTTGATCAGGTTAAAGCTTTAGAAGCAGTCCTGCCACCAAAGCCTTCATCACAATTAACAGACATGGAGCTAGATGAATGTGAGGAGACCACACTGAATGACGTGAACATGGAAGAGGAGTCAAGGAGGAAGCAGCAACAAGCTCAGCAGGAAGCATATGATGAGGATGATGATATGCCTGGTGGTGCACAGAGGGTACAGTGTGCCCAGCAGTAG 1314 0.4703 MFGRAPKKSDNSRYYEILGVSKSASQDDLKKAYKKAAIKNHPDKGGDPEKVLVSSFSVHALSVATEARFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGGHDPFDIFSSFFGGGGNPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYSGTSKKLSLSRNVICSKCSGKGSKSGASMKCAGCQGTGMKVSIRHLGPSMIQQMQHACNECKGTGETINDRDRCPQCKGEKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKAEDLIVEHTLSLTDALCGFQFVLAHLDGRQLLIKSNPGEVIKPDSFKAINDEGMPLYQRPFMKGKLYIHFNVEFPESLSLDQVKALEAVLPPKPSSQLTDMELDECEETTLNDVNMEEESRRKQQQAQQEAYDEDDDMPGGAQRVQCAQQ 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0354 437 ProSitePatterns Nt-dnaJ domain signature. 69 88 IPR018253 -
Lal9g0354 437 CDD DnaJ_C 138 365 - -
Lal9g0354 437 SUPERFAMILY HSP40/DnaJ peptide-binding domain 284 373 IPR008971 GO:0006457|GO:0051082
Lal9g0354 437 Gene3D DnaJ domain 10 127 IPR036869 -
Lal9g0354 437 Pfam DnaJ central domain 167 233 IPR001305 GO:0031072|GO:0051082
Lal9g0354 437 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 7 437 IPR044713 GO:0006457|GO:0030544
Lal9g0354 437 Pfam DnaJ domain 14 89 IPR001623 -
Lal9g0354 437 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 164 236 IPR036410 -
Lal9g0354 437 SMART dnaj_3 12 84 IPR001623 -
Lal9g0354 437 ProSiteProfiles Zinc finger CR-type profile. 154 238 IPR001305 GO:0031072|GO:0051082
Lal9g0354 437 ProSiteProfiles dnaJ domain profile. 13 92 IPR001623 -
Lal9g0354 437 MobiDBLite consensus disorder prediction 401 417 - -
Lal9g0354 437 PANTHER CHAPERONE PROTEIN DNAJ 2-RELATED 7 437 - -
Lal9g0354 437 CDD DnaJ 14 81 IPR001623 -
Lal9g0354 437 Gene3D - 281 363 - -
Lal9g0354 437 Gene3D - 128 279 - -
Lal9g0354 437 Gene3D - 167 233 - -
Lal9g0354 437 CDD DnaJ_zf 167 233 IPR001305 GO:0031072|GO:0051082
Lal9g0354 437 Hamap Chaperone protein DnaJ [dnaJ]. 10 401 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lal9g0354 437 PRINTS DnaJ domain signature 15 33 IPR001623 -
Lal9g0354 437 PRINTS DnaJ domain signature 33 48 IPR001623 -
Lal9g0354 437 PRINTS DnaJ domain signature 64 84 IPR001623 -
Lal9g0354 437 PRINTS DnaJ domain signature 84 103 IPR001623 -
Lal9g0354 437 SUPERFAMILY Chaperone J-domain 9 129 IPR036869 -
Lal9g0354 437 Pfam DnaJ C terminal domain 141 362 IPR002939 -
Lal9g0354 437 SUPERFAMILY HSP40/DnaJ peptide-binding domain 138 282 IPR008971 GO:0006457|GO:0051082
Lal9g0354 437 MobiDBLite consensus disorder prediction 396 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0354 Lal-Chr9 2362102 2364690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0354 14 91 C2H2 Transcription Factor Family AT1G74250 40.506 9.93e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0354 K09503 - gmx:547558 689.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0354 9 2362102 2364690 Lal9g0354 9 2362102 2364690 ECH
Lal2g0390 2 2360098 2362751 Lal9g0354 9 2362102 2364690 ECH
Lal1g0509 1 3277186 3279635 Lal9g0354 9 2362102 2364690 LSH
Lal2g0390 2 2360098 2362751 Lal9g0354 9 2362102 2364690 LSH