Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0350 ATGAATGATCATGAAACTGAGGTTCCTGTCCTTTTCCTTTGTCCCATTTCATTGCAACTTATGAGAGACCCTGTCACAGTGTGCACAGGAATTACATATGATAGAGAAAACATAGAAAGATGGCTAATTTCATGCAGGAATAGTATCTGCCCAGTTACTAAGCAACCATTGTTACACACTGATCTTAGTCTTACTCCAAACCACACTCTACATAGGTTGATTCAAGCATGGTGCAAAAGCAATGCCAATTTTGGAATTGAATACATCTCAACTCCAAAGCCTACTATTCACAGAACTCATATTGATACACTCCTCACTGAAGCAAAGAGTTTCCCTGATAAGCTTCTGGGATGCCTTAAAAGGCTTCAATCTATTGCTTTAGAAAGTGAAAGTAACAAAATCTGTTTGGTGTCTGCAGGTGTAATTGATTTCCTGGCTTCAACCTTGAAGAGTAATCACCAAGAGGACTTAACTGATATTATGATTATTGAAGCAGCTATTGAAGTCTTAGTTCAACTAAATCTTTCTTCAGCTCATCTTGAACCTCTGATGAATAATGAGGGAATTCAATTTATTGAGTCTTTGTTTCAGGTTTTGAGGCTTGGAAATAACAAGTGTAGAGGTTATGCTACTATTCTATTGAAGTCAGCATTTGAGGTGGCTGGTCCAACACAATTGAACAGTGTCAGAAAGGAACTGTTTGTTGAAATAATAAGAGTTCTAAGCGATCAGATTTCACAGCAGGCTTCTAAAGCTGCATTGAGGCTTCTCCTGGAGCTTTTTCCATGGGGCAGAAACCGAATCAAAGCGGTCGAAGGTGGCACGGTTTTAGTCCTCGTTGAGCTCCTTCTTGGTGTTAATGATAGAAGAGCATGTGAGCTTATGTTGATGGCTTTGGATAAACTTTGTGACTGTGCAGAAGGAAGGGCTGAGTTGTTGAACCATGGGGCAGGGTTGGCCATTGTGTCCAAGAAAATTCTAAGGTTTTCTCATGTGGTAAGTGATAGAGGGGTCAGAATTTTGGGCTCAATTTGTAGGTATTCTGCCACTCCTAGAGTCCTTCATGAAATGTTGCTAGTTGGGGCTGTGAACAAGTTATGTTTGGTTCTTCAAGTTGATGGAAACATCAAGACCAAGGAGAGGGCCATGGAGATACTCAAGTTGCACTCTATGGTTTGGAAGAATTCCCCTTGTATTCCATTTCCCTTGCTTTCACTCTATCCATGA 1227 0.4051 MNDHETEVPVLFLCPISLQLMRDPVTVCTGITYDRENIERWLISCRNSICPVTKQPLLHTDLSLTPNHTLHRLIQAWCKSNANFGIEYISTPKPTIHRTHIDTLLTEAKSFPDKLLGCLKRLQSIALESESNKICLVSAGVIDFLASTLKSNHQEDLTDIMIIEAAIEVLVQLNLSSAHLEPLMNNEGIQFIESLFQVLRLGNNKCRGYATILLKSAFEVAGPTQLNSVRKELFVEIIRVLSDQISQQASKAALRLLLELFPWGRNRIKAVEGGTVLVLVELLLGVNDRRACELMLMALDKLCDCAEGRAELLNHGAGLAIVSKKILRFSHVVSDRGVRILGSICRYSATPRVLHEMLLVGAVNKLCLVLQVDGNIKTKERAMEILKLHSMVWKNSPCIPFPLLSLYP 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0350 408 PANTHER WDSAM1 PROTEIN 7 408 IPR045185 GO:0061630
Lal9g0350 408 Gene3D - 98 397 IPR011989 -
Lal9g0350 408 SUPERFAMILY RING/U-box 2 87 - -
Lal9g0350 408 SUPERFAMILY ARM repeat 115 387 IPR016024 -
Lal9g0350 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Lal9g0350 408 ProSiteProfiles U-box domain profile. 7 84 IPR003613 GO:0004842|GO:0016567
Lal9g0350 408 PANTHER OS11G0573500 PROTEIN 7 408 - -
Lal9g0350 408 Pfam U-box domain 8 82 IPR003613 GO:0004842|GO:0016567
Lal9g0350 408 SMART Ubox_2 11 77 IPR003613 GO:0004842|GO:0016567
Lal9g0350 408 CDD RING-Ubox_PUB 12 55 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0350 Lal-Chr9 2325536 2326762 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0350 3 408 U-box Gene Family AT2G35930 49.024 1.03e-135 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0350 - - gmx:100778012 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0350 9 2325536 2326762 Lal9g0350 9 2325536 2326762 ECH