Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0349 ATGGCTGAACATGAAGTCCCTCATTATTTTGTTTGTCCCATTTCTCTCCAGATCATGAAGGACCCTGTGACTGCAGTGACAGGCATAACATACGATAGAGAAAGCATTGAGCAGTGGTTGCTCAAGTCCAAATATTGCATGTGCCCAGTTTCCAAACAACCACTGCCAAGAAGCTCAGAGTTCTTAATTCCCAACAACACTCTATTGAGACTAATCCATGCATGGTGCTCGGAAAATGAAGCCAAGGGTGTAGATCAAATTCAAAAGTTAAAAACCCCTCTTGATAAGGTTCATGTTCAGAAACTTGTGAGGGATCTTGAGGTACCTCATTTGTATCAAACAACATTGGAGAAGATGCATGCTTTGGCCACAAAGAGCGGGATGAACAGAACGTGCATGGTAGATGAAGGAGTTACCAAGGCTATGATTATGGTGATTAACAAGAGTTTCAAAGAAGGTAAAACAACATGCCTGGAAGAAGCTATTGGAATTCTTCGTCTTCTTTGGAGTGTTCCAACTATTGCCAACAACATGAACCCTCTTGTTGGAGAAAACATGGACTTCATCAACTCTTTGACTTGGACGTTGAAACTTCAAGTGCATAATAATGTAAAGATGGTAAACGAAACAATGCTTCTATTGAAGTCTATCATCGAAGTCGCAGATTCAACCTTGTTAGGAAGTTTAAACATTGAATTCTTCAGAGAAATGGTTTCAGTTCTAAGAAATAATAAATCACTCTCTCAACAAGCTTTAAAATCTGCTTTGTATGTCCTTATACAAACATGCCCTGTGGGTAGAAACAAAACAAGGATCGTGGAAGCTGGTGCAATCAAAGAAATCATCGAGCTTGAGCTAGAAAAACCAGAAAAGAGCATAACAGAACTCATATTTAACCTTCTAGCACATCTTTGTTCATGTGGTGATGGAAGAAAACAGTTTTTGCTTCATGCAGCGGGCATAGCAATGATTTCTAAGAGGATTCTGAGCGTTTCTCCAGCAACAGATGATAGAGCAATTCAAATATTTTCATTGATCGCTAAGAATCCAGGATCAAATGAAATCGTTCTAGAGATGTTGAGGGTTGGAGCAGTGTCAAAACTTTGCATGGTGATGCAAGCGGCTTGTGCTTCATATTTGAAAGAAAAGACCAGAGATATCCTTAGGTTACACTCCAAAATTTGGAAAAATTCTCCTTGTATACTGTGTATTTCCTAA 1218 0.3916 MAEHEVPHYFVCPISLQIMKDPVTAVTGITYDRESIEQWLLKSKYCMCPVSKQPLPRSSEFLIPNNTLLRLIHAWCSENEAKGVDQIQKLKTPLDKVHVQKLVRDLEVPHLYQTTLEKMHALATKSGMNRTCMVDEGVTKAMIMVINKSFKEGKTTCLEEAIGILRLLWSVPTIANNMNPLVGENMDFINSLTWTLKLQVHNNVKMVNETMLLLKSIIEVADSTLLGSLNIEFFREMVSVLRNNKSLSQQALKSALYVLIQTCPVGRNKTRIVEAGAIKEIIELELEKPEKSITELIFNLLAHLCSCGDGRKQFLLHAAGIAMISKRILSVSPATDDRAIQIFSLIAKNPGSNEIVLEMLRVGAVSKLCMVMQAACASYLKEKTRDILRLHSKIWKNSPCILCIS 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0349 405 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Lal9g0349 405 Pfam U-box domain 6 80 IPR003613 GO:0004842|GO:0016567
Lal9g0349 405 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Lal9g0349 405 SUPERFAMILY ARM repeat 110 375 IPR016024 -
Lal9g0349 405 Gene3D - 98 391 IPR011989 -
Lal9g0349 405 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 4 401 - -
Lal9g0349 405 PANTHER WDSAM1 PROTEIN 4 401 IPR045185 GO:0061630
Lal9g0349 405 SUPERFAMILY RING/U-box 4 85 - -
Lal9g0349 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 92 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0349 Lal-Chr9 2320385 2322367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0349 3 401 U-box Gene Family AT2G35930 37.221 1.33e-88 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0349 - - lang:109351746 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0349 9 2320385 2322367 Lal9g0349 9 2320385 2322367 ECH
Lal25g0068 25 485506 486951 Lal9g0349 9 2320385 2322367 PCT
Lal9g0349 9 2320385 2322367 Lal25g0068 25 485506 486951 PCT