Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0347 ATGAAGAGAGATATGGCAACGTACTTTAATGGTAGCAGCAGTTCAGAAATCCAATCTTCTGCAGAAGGGTTACAGACACTTTACCTTATGAACCCAAACTACGTACCCTACTCTGACGCGCCGCAACATCAAACACCAAACATGTTCCTCATCAATCCCAACACTGCTCCAACTACTACTTCTCCTTCCCACGCGCTAAATCTTGCCAACTTCACACACGCGCCTTCACCTTCCAACAATATGACTGGTGCTACCATTCCTCTCTCAAACACCAACGGATCCACCAACACCAACGAAATCTCCAACTTTCACGACTTCGCCGCCATGGCCACGGCCCCTCGTGTCCATTATAACATGTGGGGTTTTGATCAAACCCCATGGTCAGCCGCAGCGGTGACGATAGCTGCATCCCCGTCTAACAATTCGGGGTATGCAATTACCGCCAGCACTGCTGCAGCTGATATTTCACAGCAGGTTGGTTTTCATAGACCTAATAATCAGCAGCAGGGTTTGTCACTTAGTCTCTCTTCTCAACAACCAGATTATAGATCGCTGTCCGGAGAGGTATCTGCGGCGACTCGTGGCAGTGGAATCTTGGGTATGAATAATATTAATAGTAACAACATGATTTTGGGGTCGAAGTATTTGAAAGCAGCACATGAACTTCTTGATGAAGTTGTGAATGTGGGCAAGGGAATTTTCAAAGGGGAGTCTATAAAAAGTGTTTTGAGTAAAGAGAAGAAGATGAAAACGGATATTGAATCAATATCTGGGATTGGTGGTGATGGTTCAAGTGGTGGAGGACAAAACAGTGAAAGCAAACAAGGTGTTGAACTCAGCACGACTCAGAGACAAGAGCTTCAGATGAAGAAATCCAAACTTGTCAGCATGCTCGATGAGAATGTTGTCACTCATTATCAGTACTTGTTTCCTCCTGAAAATGGAAGTAGAGTAAAGGAAAGTGATAAGAAAAAGTCACTTGGTCTGGTGGAGCAAAGATACCGACATTACCACCACCAAATGCAAATAGTGATAACATCATTTGAGCAAGTAGGTGGTTATGGAGCAGCTAAATCATACACATCACTTGCCTTAAAGACAATCTCAAAGCAATTCAGATGTCTTAAGGATGCAATATCATCACAAATAAGGGCAATAAGCAAGACATTAGGTGAAGATGATTGCTTAGGAGTCAAGGTAGAAGGTTCAAGACTTAGGTATGTTGATCATCATCTAAGACAACAAAAAACATTACAACAATTGGGAATGATCCAACATAATGCTTGGAGGCCACAAAGAGGTTTGCCTGAAAGAGCTGTTTCCATTCTTCGTGCTTGGCTCTTTGAACATTTCCTTCACCCCTATCCTAAGGACTCAGATAAGGTTATGCTTGCAAAACAAACTGGGCTTACTCGAAGCCAGGTGTCTAACTGGTTTATAAATGCCCGAGTTCGGCTATGGAAACCTATGGTTGAAGAAATGTACTTGGAAGAAGTGAAGGAGCAAGAACAGAATCGTGTCTCCCAAGATAACACAAATAGATCAAAAGATCAATCAAGCAAGGAACTAAAGTCAGTAGCAGCTAATAATGCTGATGTTCTCCAATCCAAATCAGAAAGCTCCTTCAATAATCAAAACACTTCACCAACTGAGATCTCAAACTGTAATAATTTAACGTCAACATCTCCCATGGGAGTATCAACAACCCTCAAATCCCAATATGGTAATTTTCATCTTGCAGGGTCTTCCCATGACATGCAAAATAATCCAAACAAGAGAAGAAGTTCTGAACTGCACAACCCTCTAGGTAGTGGTATATTTTCAGTGGACATGGACATGAAGCCTGGAGAGACAAATAGAGAAATTACCAATACAAAGTTTGGCATTGAAAACCATGGTAGTGGTGGGGGTTATGTACCATTTTCTATTGAAGACATTGGAAGGTTTAATAATGAGACTGAGAATTTAGCTCCAAGGTTTGATGGAAATGGTGTTTCTCTCACTCTTGGACTTCCACGTAGTGAGAACTTTCCTCTTTCTGGAACACAGCATGAGTTTCTCTCAGAGAACATACATTTGGGAGATGGTAGGATTCATGAGATGGGAACCAATGAAAATGAGTTTCGTGCCATTAATAGTACTCCACCTTCTTCTCATTCAGGTACCAGTTTTGAGAGTATTGACATCCAAAATAGAAAGAGGTTTTCTGCACAGTTATTGCGGGATTTCGTGGCATAA 2238 0.4182 MKRDMATYFNGSSSSEIQSSAEGLQTLYLMNPNYVPYSDAPQHQTPNMFLINPNTAPTTTSPSHALNLANFTHAPSPSNNMTGATIPLSNTNGSTNTNEISNFHDFAAMATAPRVHYNMWGFDQTPWSAAAVTIAASPSNNSGYAITASTAAADISQQVGFHRPNNQQQGLSLSLSSQQPDYRSLSGEVSAATRGSGILGMNNINSNNMILGSKYLKAAHELLDEVVNVGKGIFKGESIKSVLSKEKKMKTDIESISGIGGDGSSGGGQNSESKQGVELSTTQRQELQMKKSKLVSMLDENVVTHYQYLFPPENGSRVKESDKKKSLGLVEQRYRHYHHQMQIVITSFEQVGGYGAAKSYTSLALKTISKQFRCLKDAISSQIRAISKTLGEDDCLGVKVEGSRLRYVDHHLRQQKTLQQLGMIQHNAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEVKEQEQNRVSQDNTNRSKDQSSKELKSVAANNADVLQSKSESSFNNQNTSPTEISNCNNLTSTSPMGVSTTLKSQYGNFHLAGSSHDMQNNPNKRRSSELHNPLGSGIFSVDMDMKPGETNREITNTKFGIENHGSGGGYVPFSIEDIGRFNNETENLAPRFDGNGVSLTLGLPRSENFPLSGTQHEFLSENIHLGDGRIHEMGTNENEFRAINSTPPSSHSGTSFESIDIQNRKRFSAQLLRDFVA 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0347 745 MobiDBLite consensus disorder prediction 501 558 - -
Lal9g0347 745 Pfam Associated with HOX 209 380 IPR006563 -
Lal9g0347 745 Gene3D - 432 512 - -
Lal9g0347 745 MobiDBLite consensus disorder prediction 262 283 - -
Lal9g0347 745 MobiDBLite consensus disorder prediction 522 558 - -
Lal9g0347 745 CDD homeodomain 429 490 IPR001356 GO:0003677
Lal9g0347 745 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 12 307 - -
Lal9g0347 745 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 329 691 - -
Lal9g0347 745 SMART prehox3 204 381 IPR006563 -
Lal9g0347 745 Pfam Homeobox KN domain 446 485 IPR008422 GO:0003677|GO:0006355
Lal9g0347 745 ProSiteProfiles 'Homeobox' domain profile. 426 489 IPR001356 GO:0003677
Lal9g0347 745 SUPERFAMILY Homeodomain-like 430 495 IPR009057 -
Lal9g0347 745 SMART HOX_1 429 493 IPR001356 GO:0003677
Lal9g0347 745 MobiDBLite consensus disorder prediction 255 283 - -
Lal9g0347 745 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 12 307 - -
Lal9g0347 745 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 329 691 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0347 Lal-Chr9 2305622 2311012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0347 5 745 Homeobox Transcription Factor Family AT2G35940 40.741 5.09e-125 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lal9g0347 POX 6.8e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0347 - - gmx:100786883 741.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0347 9 2305622 2311012 Lal9g0347 9 2305622 2311012 ECH
Lal2g0383 2 2290802 2296300 Lal9g0347 9 2305622 2311012 LSH