Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0342 ATGTCAGGCACGACGCCACCACCCTCCGCCGATGCTAACCCGCCGGAGCAGATTAAGCTCACGATGAAACGACAACTTCCGTTTTCATCGATGAAACCGCCGTTTGTCTCTGCCGGAGATTATCATCGCTTTGTTCCTGACCGACGCCGAAATGCTGAACAAACAGCCGAAGCCATAGTCGTCAAGTCTCCACAATTGAAGCGGAAGAACGAAGTGACTGATTTTGAAACTGATTATTGTGATAGGATGAATCCTGGATCCACTGAAGCACCTAATAGTCCTTTTCTGACACCTGTATCGGGAAAAATGGAGAAGGGTGGCAAATCCTCTAGGTTTACAAAATCCAATAGGCCTGGACCTCAAACTCCAGGATCAAATATTGGTTCTCCTTCAGGGAATAGTCTCACACCTGCTGGTCCATGTCGTTATGACAGCTCTTTAGGTCTGTTGACAAAGAAATTCATCAATTTGATCAAACAAGCAGAGGATGGTATTCTTGATCTTAATAATGCTGCTGACACATTAGAGGTGCAAAAGAGAAGGATATATGATATAACAAATGTTCTTGAAGGGATTGGCCTTATAGAAAAGAAGCTCAAGAACAGAATTCAGTGGAAAGGACTGGATGTCTCAAGACCAGGGGAGGCTGAGGATAGTTTTAGTAGTTTACAGGCAGAAGTTGAAAATCTTACAATGGAGGAGCATCAGTTAGATGAACAAATAAGGGAGATGCAAGAAAGACTAAGAGAACTTAGTGAAGATGAAAACAACGAAAAGACATTAACTCAGAACCTTTTTGCCCACTTTCAGAATGAAACCTTGATAGCAATTAAGGCTCCACATGGCACCACTTTGGAGGTCCCTGATCCTGATGAGGCTGTTGATTATCCCCAGAGGAGATACAGGATAGTCCTGAGAAGCACTATGGGTCCGATAGATGTTTACCTTGTTAGTCAATTTGAAGAGATTAATGGTGTTAATGCTGCACCAAATATTCCATCCAGTCCAGAATTTAACACACAACAGTCAACAGTGGTCTCAGAGGATAGAGGGAAGGGCATAGCAGAGTGTAGAGGTAAAGAAATAGAAGTGCAGGGACAAGATGGTCATGGGCCTAGTTCAGATTTTACTACTGCACAGGACTTCGTGAGCGGGATAATGAAGATTGTTCCTTCCGATGTTGATAGTGATGCTGATTACTGGCTTTTATCAGATGCGGATGTTAGCATAACAGACATGTGGAGAGCAGAATCTGGAGTTGAGTGGAATGAACTGGATAAAACACTTCAACAAGATATTCTTGTAACTCGCGATCTCACTGCCACCCCAACTAATCCACCAAAGGTAAGTGAAGCCCCTTCTACATCTAACCCTACTGGAGTTGAAGCTTCAAAAGGATTCTAG 1404 0.433 MSGTTPPPSADANPPEQIKLTMKRQLPFSSMKPPFVSAGDYHRFVPDRRRNAEQTAEAIVVKSPQLKRKNEVTDFETDYCDRMNPGSTEAPNSPFLTPVSGKMEKGGKSSRFTKSNRPGPQTPGSNIGSPSGNSLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNNAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEAEDSFSSLQAEVENLTMEEHQLDEQIREMQERLRELSEDENNEKTLTQNLFAHFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEINGVNAAPNIPSSPEFNTQQSTVVSEDRGKGIAECRGKEIEVQGQDGHGPSSDFTTAQDFVSGIMKIVPSDVDSDADYWLLSDADVSITDMWRAESGVEWNELDKTLQQDILVTRDLTATPTNPPKVSEAPSTSNPTGVEASKGF 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0342 467 Coils Coil 220 261 - -
Lal9g0342 467 Coils Coil 158 178 - -
Lal9g0342 467 PANTHER TRANSCRIPTION FACTOR E2FB 19 441 - -
Lal9g0342 467 PANTHER TRANSCRIPTION FACTOR E2F 19 441 IPR015633 GO:0000978|GO:0006357
Lal9g0342 467 MobiDBLite consensus disorder prediction 438 467 - -
Lal9g0342 467 Pfam E2F transcription factor CC-MB domain 223 318 IPR032198 GO:0046983
Lal9g0342 467 MobiDBLite consensus disorder prediction 82 139 - -
Lal9g0342 467 SUPERFAMILY E2F-DP heterodimerization region 220 319 IPR037241 -
Lal9g0342 467 MobiDBLite consensus disorder prediction 112 139 - -
Lal9g0342 467 Pfam E2F/DP family winged-helix DNA-binding domain 144 207 IPR003316 GO:0005667|GO:0006355
Lal9g0342 467 SMART E2F_TDP_2 142 207 IPR003316 GO:0005667|GO:0006355
Lal9g0342 467 Gene3D - 214 319 - -
Lal9g0342 467 Gene3D - 136 209 IPR036388 -
Lal9g0342 467 CDD E2F_DD 218 319 IPR032198 GO:0046983
Lal9g0342 467 SUPERFAMILY "Winged helix" DNA-binding domain 142 205 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0342 Lal-Chr9 2262478 2267731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0342 23 460 E2F-DP Transcription Factor Family AT5G22220 53.419 1.37e-136 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lal9g0342 E2F_CC-MB 6.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0342 K06620 - gmx:100819817 669.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0342 9 2262478 2267731 Lal9g0342 9 2262478 2267731 ECH
Lal1g0441 1 2737596 2744014 Lal9g0342 9 2262478 2267731 LSH
Lal2g0376 2 2210635 2216853 Lal9g0342 9 2262478 2267731 LSH