Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0332 ATGCCAAGGGAAAATGCAAATTCTTCACCAGTTGCTAAGCCTTCTGAGCCTGAAAAACCGGCAGAATCTGATGAGAGGGTCAATTTTACTGACGCAAATGATTCTGATGAAGAAATTGAATATGAAGAAATAGAAGTAGAAGAGGAGGTGGAAGAAGAGGAGGAGGAGGAGGACCCGGAGGAGATAGAAGAAGAGGAGGAGGAAGAAGAGGTGGAGGTTGAAGAAGTGGAAGAAGATGATGCAAAAATGGAAGATGAGAATGAGAAGAAAAAGCATGCTGAACTTCTTTCTCTTCCTCCTCATGGGTCTGAAGTATACATTGGTGGCATTCCTCTTGATGTCTCAGATGAGGATTTGAAGACTTTTTGTGAGCATATTGGGGAAGTTGCAGAGGTTCGCATCATGAAAGGAAAGGATGCTTCTGAGAACAAGGGCTTCTGTTTTGTGACTTTTAGAAGTGTGGAGTTGGCTTCTAAAGCCATTGAGGAGCTGAATAATAAAGAATTTAAGGGTAAAAGAATTAAATGTTCCACAGCTCAAGCAAAACACCGCCTTTTTATTGGCAATGTTCCTAGAAGCTGGGACGAGGAAGATCTGAGGAAGGTTGTAACTGAGATTGGACCTGGTGTCACTTCTATAGAACTAGTCAAGGATATGAAGAACTTAAAAAATAACCGTGGTTTTGCTTTCGTCGACTATAATAATAATGCATGTGCTGAATATTCAAGGCAAAAGATGATGAACCCATCATTTAAGCTAGGTGACAATGCTCCAACAGTGAGCTGGGCTGACCCTAAAAATGCTGATTCCTCTGCTTCATCTCAGGTGAAAGCAGTATATGTGAAGAACTTACCTAAGAATGTAACTCAAGAACAGTTGAAGAAGCTTTTTGAACGTCACGGGAAGATCACAAAGGTGGTTCTTCCATCCGCAAAGTCTGGGCAGGAAAAGAACAGAATCGGTTTTGTTCATTTTGCAGAGAGGTCAAATGCTATGAAAGCACTAAAAAATACTGAAAAATATGAATTAGAAGGTCAAATTTTAGAGTGCTCTCTAGCAAAGCCACAGGCTGATCAAAAGTATGGAGGATCAAACACACAGAAGCCAGGATTGCTTCCAAGTTATCCACCACAGGTTGGTGGTTATGGTTTGCTTGGGGGTCCCTATGGTGCACTTGGCGCAGGATACGGTGCTCCAGGTCTTCCACAGCCCATGATGTATGGAACGGGTCCAACTCCTGCTGGAATGGGCATGATGCCTATGCTTCTGCCTGATGGGCGGATTGCATATGTCTTGCAACATCCAGGAATGCAGCCACAAGCACAAACCCCACCCTCACATCAGAGAAGTGGCAGGAGTGGTGGTGGCAGTAGCGGTAGCAGGAATGCCAGCAGTTCAAATAAAGGAAGGCACAACAATGATAATGGCCAAGGGCGCCGATATCGTCCATATTAG 1455 0.4378 MPRENANSSPVAKPSEPEKPAESDERVNFTDANDSDEEIEYEEIEVEEEVEEEEEEEDPEEIEEEEEEEEVEVEEVEEDDAKMEDENEKKKHAELLSLPPHGSEVYIGGIPLDVSDEDLKTFCEHIGEVAEVRIMKGKDASENKGFCFVTFRSVELASKAIEELNNKEFKGKRIKCSTAQAKHRLFIGNVPRSWDEEDLRKVVTEIGPGVTSIELVKDMKNLKNNRGFAFVDYNNNACAEYSRQKMMNPSFKLGDNAPTVSWADPKNADSSASSQVKAVYVKNLPKNVTQEQLKKLFERHGKITKVVLPSAKSGQEKNRIGFVHFAERSNAMKALKNTEKYELEGQILECSLAKPQADQKYGGSNTQKPGLLPSYPPQVGGYGLLGGPYGALGAGYGAPGLPQPMMYGTGPTPAGMGMMPMLLPDGRIAYVLQHPGMQPQAQTPPSHQRSGRSGGGSSGSRNASSSNKGRHNNDNGQGRRYRPY 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0332 484 MobiDBLite consensus disorder prediction 1 89 - -
Lal9g0332 484 MobiDBLite consensus disorder prediction 437 472 - -
Lal9g0332 484 Coils Coil 36 93 - -
Lal9g0332 484 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 181 IPR000504 GO:0003723
Lal9g0332 484 SUPERFAMILY RNA-binding domain, RBD 100 269 IPR035979 GO:0003676
Lal9g0332 484 Gene3D - 27 183 IPR012677 -
Lal9g0332 484 CDD RRM_SF 105 177 - -
Lal9g0332 484 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 277 355 IPR000504 GO:0003723
Lal9g0332 484 SMART rrm2_1 278 351 IPR003954 GO:0003676
Lal9g0332 484 SMART rrm2_1 104 177 IPR003954 GO:0003676
Lal9g0332 484 MobiDBLite consensus disorder prediction 34 82 - -
Lal9g0332 484 Gene3D - 266 383 IPR012677 -
Lal9g0332 484 SMART rrm1_1 278 351 IPR000504 GO:0003723
Lal9g0332 484 SMART rrm1_1 184 261 IPR000504 GO:0003723
Lal9g0332 484 SMART rrm1_1 104 177 IPR000504 GO:0003723
Lal9g0332 484 Gene3D - 184 264 IPR012677 -
Lal9g0332 484 PANTHER RNA RECOGNITION MOTIF 1 457 - -
Lal9g0332 484 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 265 IPR000504 GO:0003723
Lal9g0332 484 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 457 - -
Lal9g0332 484 MobiDBLite consensus disorder prediction 437 484 - -
Lal9g0332 484 MobiDBLite consensus disorder prediction 17 33 - -
Lal9g0332 484 SUPERFAMILY RNA-binding domain, RBD 273 381 IPR035979 GO:0003676
Lal9g0332 484 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 279 346 IPR000504 GO:0003723
Lal9g0332 484 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 175 IPR000504 GO:0003723
Lal9g0332 484 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 246 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0332 Lal-Chr9 2213753 2221420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0332 105 451 Eukaryotic Initiation Factors Gene Family AT2G23350 25.858 6.59e-19 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0332 K13161 - gmx:100785076 622.854