Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0330 ATGTACCATCTTCACCAACATCAAGGAAAGAACACAAATTCTTCTTCATCCAGAATGTCAATTCCTTCTTCTGATAGGCATATGTTCCTTCAAACAGGAAATGGTTCTTCTGATTCTGGACTTGTACTCTCAACTGATGCTAAGCCTAGATTGAAATGGACACCAGATCTTCATTCTAGGTTTATAGAAGCAGTTCATCAGTTAGGTGGACCTGATAAAGCAACTCCAAAAACAGTGATGAAACTCATGGGAATTCCGGGGCTTACCTTATATCATCTGAAGAGTCATCTTCAGAAGTATAGATTGAGCAAGAATATGCATGGACAAAGCAACAACGTGACACACAAAATCAGTGCAGAAACGGGAGAAAGACACTTTGAGAACAATGAAACTCATATGAACAATTTAGACCTTGCACCTAAGGCTAACAAAGATTTGCACATAAGTGAGGCTCTGCAGATGCAAATAGAGGTGCAGAGAAGGCTAAATGAACAACTTGAGGTACAAAGACACTTGCAACTCCGCATAGAGTCCCAAGGAAAATACCTGCAAGCAGTGCTAGAAAAAGCTCAAGAAACACTTGGCAGACAAAGTTTAGGAATAGTAGGACTTGAAGCTGCTAAAGTACAACTTTCTGAGCTTGTGTCCAAAGTATCCTCTCAGAGCCTGAACTCAGCATTTTCAGAACTGAAGGAATTACATGGATTTAACCCTCATGATAAACAACAAACTAACCAACCAACTGATTACTCCATAGAGAGTTGCCTCACATCCTGTGAAGGGTCACAAAAGGATCAGAAAGATATGAGCTTAAGACCCTTCAATGGCCATAACAAATCTGAATTCAAGTGGTGTACTGATCAAGTGAAAAGTAACAACTTTCTTGCCCCATTGAGCAAGAACATAGAAAGAAGAAACTGTGTTGTAGAAATAAGTCCTGCCAACTTATCTATGAGCATTGGAGTTGAAGGAGAAAAAGAAAATGGTGAATACAAACAAAGAAACTCCATTAGAACAGAACCAGTGAAACTAGTGGCTGATGAGAAGGTTTCACAGGATTATAGATTGTCTTCTTACTTTGCATCAGCAAGACTGGACCTAAACAAGGGTGAAGATAATGAGCCTGCCACAAATTGTAAACAACTTGACTTGAATGGATTCAGTTGGAGCTGA 1173 0.3956 MYHLHQHQGKNTNSSSSRMSIPSSDRHMFLQTGNGSSDSGLVLSTDAKPRLKWTPDLHSRFIEAVHQLGGPDKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNMHGQSNNVTHKISAETGERHFENNETHMNNLDLAPKANKDLHISEALQMQIEVQRRLNEQLEVQRHLQLRIESQGKYLQAVLEKAQETLGRQSLGIVGLEAAKVQLSELVSKVSSQSLNSAFSELKELHGFNPHDKQQTNQPTDYSIESCLTSCEGSQKDQKDMSLRPFNGHNKSEFKWCTDQVKSNNFLAPLSKNIERRNCVVEISPANLSMSIGVEGEKENGEYKQRNSIRTEPVKLVADEKVSQDYRLSSYFASARLDLNKGEDNEPATNCKQLDLNGFSWS 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0330 390 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 105 IPR017930 -
Lal9g0330 390 MobiDBLite consensus disorder prediction 1 41 - -
Lal9g0330 390 PANTHER MYB-RELATED PROTEIN 2 4 390 - -
Lal9g0330 390 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 390 IPR044848 GO:0003700
Lal9g0330 390 Pfam Myb-like DNA-binding domain 50 101 IPR001005 -
Lal9g0330 390 Gene3D - 47 105 - -
Lal9g0330 390 Pfam MYB-CC type transfactor, LHEQLE motif 147 193 IPR025756 -
Lal9g0330 390 Coils Coil 149 169 - -
Lal9g0330 390 SUPERFAMILY Homeodomain-like 47 103 IPR009057 -
Lal9g0330 390 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 48 103 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0330 Lal-Chr9 2206433 2209255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0330 80 389 G2-like Transcription Factor Family AT3G04030 50.755 1.80e-90 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lal9g0330 Myb_DNA-binding 7.2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0330 - - gmx:100810396 537.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0350 2 2107672 2110521 Lal9g0330 9 2206433 2209255 LSH
Lal10g1306 10 19057557 19061941 Lal9g0330 9 2206433 2209255 PCT
Lal9g0330 9 2206433 2209255 Lal10g1306 10 19057557 19061941 PCT