Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0317 ATGATCATCTCTCTCTACATTCCGCCTCTTTCTGCACCCAAATCTCAGTCCCTTTGGTCTTACTTGAAGAGAGAGAAAACGATGAAGGTCATCGCAGCTTACTTGCTCGCTGTTTTGGGAGGCATTTCTTCCCCTTCAGCTCAGGATCTTAAACATATTCTTGCCTCAGTTGGAGCCGATGCTGGTGATGACAGAATTGAGCTGCTCTTAACTGAAGTTAAGGGCAAGGACATCACTGAACTGATTGCTAGTGGAAGAGAAAAGCTAGCTTCAGTGCCTTCTGGTGGTGGTGCTGTGGCTGTTGCTGCTGCACCTGCAGGTGGTGCTGCAACTGGTGGCGCTGCTCCTGCAGCCGAGGCAAAGGAGGAAAAGAAGGTTGAAGAGAAAGAGGAGTCTGATGATGACATGGGCTTCAGTTTATTTGACTAA 429 0.4848 MIISLYIPPLSAPKSQSLWSYLKREKTMKVIAAYLLAVLGGISSPSAQDLKHILASVGADAGDDRIELLLTEVKGKDITELIASGREKLASVPSGGGAVAVAAAPAGGAATGGAAPAAEAKEEKKVEEKEESDDDMGFSLFD 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0317 142 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 17 142 IPR044076 GO:0002182|GO:0003735|GO:0022625
Lal9g0317 142 CDD Ribosomal_P2 28 142 IPR044076 GO:0002182|GO:0003735|GO:0022625
Lal9g0317 142 Pfam 60s Acidic ribosomal protein 44 141 - -
Lal9g0317 142 MobiDBLite consensus disorder prediction 118 132 - -
Lal9g0317 142 Gene3D - 27 86 IPR038716 -
Lal9g0317 142 MobiDBLite consensus disorder prediction 108 142 - -
Lal9g0317 142 Hamap 50S ribosomal protein L12 [rpl12]. 29 142 IPR027534 GO:0003735|GO:0005840|GO:0006414
Lal9g0317 142 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P2A-LIKE 17 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0317 Lal-Chr9 2046159 2047803 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0317 28 142 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 67.826 8.97e-30 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0317 K02943 - ming:122089001 126.716
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0317 9 2046159 2047803 Lal9g0317 9 2046159 2047803 ECH
Lal2g0338 2 2046150 2047566 Lal9g0317 9 2046159 2047803 ECH