Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0305 ATGTCTCGCCGCGGTGGCAGTTACCAACCTGAGCAACGCCGTGATCGCCCCTCTCCGGCGCAACCAACTCCTACCGAAGTTGCAGGAAGAGGCCGAGGTCGTGGCCGGGGCCGTGGTGGTTCTTCTCAAGGTCGTGGAGCGACTCATGCTCCGGCACCGGTGATCGGTTCTCCATCTCAGTCGTCTGTGTTTGATTCTCAACCTCCGGTGATCGGTTCTTCTTCACAGGCGCATGTTGCTTCTGCCTCTAGTTCTGTGACGCTTCCTCCTGCCGCGTCTTCTGAGGTGGCTCCTCCAACGGCTTTGACTTCAGTGGAAGCCCTGACACCAGAGGTTGCGGAGCGGTTGACGTTGAAAGCTCCGGCGCCGTCGTCGTCAAAGGCTTTTAGGTTTCCAGACCGCCCAAACTACGGGACACTCGGAAAGAAAATCAGAATTCGGGCGAATCATTTTCTCGTACAAGTTGCTGACCGTGATTTACATCACTACGATGTTGCAATCAGTCCTGAAGTTACTTCGAAGAAGGTTAATAGAGATATCATGAAACAATTAGTTGAAACATATCAAGAGACACATTTAGGTAAGCGTACACCTGCTTACGATGGCCGTAAGAATCTATACACTGGAGGCGCATTACCATTCTCATCAAGAGATTTTGTTGTTAAGTTGGTTGATCATGATCAACAAGCATCTTCGGAAGGTTCAGCAAGCAAAAAACGTGAACGTGAGTTTAAGGTCACCATCCGATTCGCATCGAAGCCTGACCTTCATCATCTTCAACAATTCCTTAGGCGCCAACAACTGGACTCTCCACAGGAGACTATCCAAGCTCTTGATGTTGTTTTGAGGGCTACACCTTCATTGAAGTATAATGTTGTGGGGAGTTCATTTTTTTCACCATATTTGGGGATAAATGGTTTACCTGGCAGTGGAACTGGTCCACTTGGCAGTGGTGCGGAGTACTGGCGAGGATACTATCAAAGCCTTCGCCCAACACAGATGGGACTATCCTTGAATGTTGATGTTTCGGCAAGGGCATTCTATGAACCAATTCTTGTGTCTGACTTTCTTGTCAAACATTTTAAATTCAATTTTTCAAGACCACTATCCGATCAAGATCGGATTAAGGTTAAGAAAGCATTGAGAGGAGTTAAAGTAGAGCTTATAGGCATTGGGACTAATAGAACTTACAAAGTTGCTGGTGTCTCAAAAGAGCCCCTGCATGAGTTAACATTTACCTTGGATGACAAAAAAACAAAAAAAACAGTTGTGCAGTATTTCTATGAGAAATATGATGTTCAGTTGAAGTATACAAATCTTCCTGCCGTCCAAGCTGGAAGTGATACAAAACCAGCCTACCTACCGATGGAGCTCTGTCAGATTGTTGCTGGACAGAGGTACACCAAGAGATTAAATGAGGAGCAAGTCACTGCTCTTTTAAGAGCAACATGCCAGCGTCCTCATGAAAGGGAAAATTACATTAAACAGATTTTGAGGCAGAACAATTTCAACACAGACAAGCTTGTGCATGACTTTGGAATTCAAGTAAAGGAAGAGCTAGCGACGGTTGAAGCCCGTGTCTTGCCTCCTCCAAGGCTTTTATATCATCAAACAGGGAAAGAATCAAGTGTTGACCCCTGGATGGGGCAGTGGAATATGATAAACAAGAAAATGATTGATGGTGGTAAGGTGCTACACTGGGCTTGTGTCAACTTTTCAACAAGAGTTAACAAAGACTTGCCATCAACTTTTTGTTTTGAGCTAGTCAATATGTGTACCAGCAAAGGAATGGTTTTCGCTCGAGAGCCTTTGGTACCAATCATTTCAGCTCACCCTTCTCAAATAGAGAAGGCTCTTGTGGATGTGCATAAGCAGTCTGTGAGTAAGCTTGCCAGCTTGAAGCAGGAGGGAAAATTAAAGCTGTTGATAATTATTTTGCCTGATGTCAAGGGGTCCTATGGAAGAATAAAGCGTATTTGTGAAACCGAATTAGGAATAGTCTCTCAGTGCTGTCAGCCCAGGCAAGCTTCAAAATTGAGTAAACAGTACCTTGAAAATGTTTCCCTCAAGATAAATGTCAAGGTTGGTGGTCGAAACACAGTTTTGAATGATGCAATTCAGAGGACAATTCCTCATGTGAGCGATCTGCCAACATTAATCTTGGGTGCAGATGTGACACATCCACAACCAGGAGAAGATTCCAGCCCTTCTATAGCTGCAGTTGTCGGATCAATGGACTGGCCTTGGGTCACAAAATACAGGGGAATTGTTTCAGCTCAATCTCACCGCGAAGAAATTATTCAGGATCTTTATAAATCTTATGAAGATCCGAAGAGGGGATTGGTACATGGTGGAATGATCAGAGAGTTACTTAGAGCTTTCTACCAATCAGCCAGGGTTAAGCCTGCCAGGATTATATTCTACAGAGATGGTGTCAGTGAGGGTCAATTCAGTCAAGTTTTGCTTCACGAAGTGGATGCAATAAGAAAGGCTTGTGTCTCGTTAGAAGAGGGATATCTACCCCCAATTACCTTTGTGGTGGTACAGAAGAGACACCACACTCGATTTTTCCCTGTTGATCGGTCTCAAACGGATAGAAGTGGAAACATTATGCCAGGGACTGTTGTGGATACCTCTATCTGTCACCCTCGGGAACATGACTTTTATCTTAATAGTCATGCAGGGATTCAAGGAACAAGTCGACCAACACATTATCATGTTTTGTATGATGAGAACTATTTCACTGCGGATGAGCTTCAAAGTTTTACAAATAACTTATGTTATACGTATGCAAGATGCACTCGATCAGTTTCAATAGTCCCTCCTGCTTATTATGCACACTTGGCTGCTTTCCGAGCTCGCTACTACATCGAAGGGGAATCATCAGATATAGGTTCTACAAGTGGTGGAAGTGGAAGCAGGGGTACTAACGTCATGGTGACTATGCCCTCAGTTATGGACAGCGTCAAAGAAGTTATGTTTTTCTGTTAA 2991 0.444 MSRRGGSYQPEQRRDRPSPAQPTPTEVAGRGRGRGRGRGGSSQGRGATHAPAPVIGSPSQSSVFDSQPPVIGSSSQAHVASASSSVTLPPAASSEVAPPTALTSVEALTPEVAERLTLKAPAPSSSKAFRFPDRPNYGTLGKKIRIRANHFLVQVADRDLHHYDVAISPEVTSKKVNRDIMKQLVETYQETHLGKRTPAYDGRKNLYTGGALPFSSRDFVVKLVDHDQQASSEGSASKKREREFKVTIRFASKPDLHHLQQFLRRQQLDSPQETIQALDVVLRATPSLKYNVVGSSFFSPYLGINGLPGSGTGPLGSGAEYWRGYYQSLRPTQMGLSLNVDVSARAFYEPILVSDFLVKHFKFNFSRPLSDQDRIKVKKALRGVKVELIGIGTNRTYKVAGVSKEPLHELTFTLDDKKTKKTVVQYFYEKYDVQLKYTNLPAVQAGSDTKPAYLPMELCQIVAGQRYTKRLNEEQVTALLRATCQRPHERENYIKQILRQNNFNTDKLVHDFGIQVKEELATVEARVLPPPRLLYHQTGKESSVDPWMGQWNMINKKMIDGGKVLHWACVNFSTRVNKDLPSTFCFELVNMCTSKGMVFAREPLVPIISAHPSQIEKALVDVHKQSVSKLASLKQEGKLKLLIIILPDVKGSYGRIKRICETELGIVSQCCQPRQASKLSKQYLENVSLKINVKVGGRNTVLNDAIQRTIPHVSDLPTLILGADVTHPQPGEDSSPSIAAVVGSMDWPWVTKYRGIVSAQSHREEIIQDLYKSYEDPKRGLVHGGMIRELLRAFYQSARVKPARIIFYRDGVSEGQFSQVLLHEVDAIRKACVSLEEGYLPPITFVVVQKRHHTRFFPVDRSQTDRSGNIMPGTVVDTSICHPREHDFYLNSHAGIQGTSRPTHYHVLYDENYFTADELQSFTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEGESSDIGSTSGGSGSRGTNVMVTMPSVMDSVKEVMFFC 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0305 996 CDD PAZ_argonaute_like 353 462 - -
Lal9g0305 996 Pfam Argonaute linker 2 domain 489 535 IPR032472 -
Lal9g0305 996 Pfam Argonaute linker 1 domain 293 349 IPR014811 -
Lal9g0305 996 Gene3D paz domain 345 467 - -
Lal9g0305 996 PANTHER PROTEIN ARGONAUTE 1A 61 976 - -
Lal9g0305 996 Gene3D - 527 704 - -
Lal9g0305 996 ProSiteProfiles Piwi domain profile. 641 958 IPR003165 GO:0003676
Lal9g0305 996 Pfam Piwi domain 642 957 IPR003165 GO:0003676
Lal9g0305 996 SUPERFAMILY Ribonuclease H-like 636 958 IPR012337 -
Lal9g0305 996 SMART DUF1785_2 291 350 IPR014811 -
Lal9g0305 996 MobiDBLite consensus disorder prediction 54 77 - -
Lal9g0305 996 Pfam N-terminal domain of argonaute 142 282 IPR032474 -
Lal9g0305 996 SMART PAZ_2_a_3 355 488 IPR003100 GO:0005515
Lal9g0305 996 Pfam PAZ domain 376 479 IPR003100 GO:0005515
Lal9g0305 996 Pfam Mid domain of argonaute 546 624 IPR032473 -
Lal9g0305 996 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 61 976 - -
Lal9g0305 996 MobiDBLite consensus disorder prediction 1 77 - -
Lal9g0305 996 SMART Piwi_a_2 641 958 IPR003165 GO:0003676
Lal9g0305 996 SUPERFAMILY PAZ domain 144 504 IPR036085 GO:0005515
Lal9g0305 996 Gene3D - 710 996 IPR036397 GO:0003676
Lal9g0305 996 CDD Piwi_ago-like 509 957 IPR045246 -
Lal9g0305 996 ProSiteProfiles PAZ domain profile. 367 463 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0305 Lal-Chr9 1968455 1977685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0305 34 996 Eukaryotic Initiation Factors Gene Family AT1G48410 55.533 0.0 1089
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0305 K11593 - jre:109001082 1257.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0305 9 1968455 1977685 Lal9g0305 9 1968455 1977685 ECH
Lal2g0324 2 1963027 1968722 Lal9g0305 9 1968455 1977685 LSH