Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0302 ATGGAATTGTACTACAACCGCAGAATACTCCTACTAAACCAGGATTTACCTTACTCCTACTCCATATCCATAACCCCTGACATTGAACCACCCACTACCACCACCAACACCACCACCATCTCAGTTTATGGAAGTACTTCGCAACTTCCACCTCGTCCAATTTTCAGTTCCGTTATTTCCTATGTTATCATTATCATCTTAGCATCCCTTTTATTACTCGCCTTCATCATCTTGTACATTCGTCGAGATCATTCATCATCTCATAATCCTTCAAACAATGAGCGCGTGGTTCCCACGGCCTCGAAGACTCTTCTGGCACAGCAAGTAGATGATTGTGTGATATGTTTGGAGGAGCTCAGGGAAGGTGAGAAGGTGAAGATGATTCTGTACTGCAAGCACGTGTTCCACCCTCATTGTATCGACACGTGGCTCGCTAAGCACGTGACGTGTCCCGTTTGCCGGTGCAATAAGTTGAGTGAAATGAAAGTGGCAGATGAAAATGGAGTTGGAACACAGTGA 519 0.4509 MELYYNRRILLLNQDLPYSYSISITPDIEPPTTTTNTTTISVYGSTSQLPPRPIFSSVISYVIIIILASLLLLAFIILYIRRDHSSSHNPSNNERVVPTASKTLLAQQVDDCVICLEELREGEKVKMILYCKHVFHPHCIDTWLAKHVTCPVCRCNKLSEMKVADENGVGTQ 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0302 172 PANTHER RING FINGER DOMAIN-CONTAINING 36 157 - -
Lal9g0302 172 SMART ring_2 112 153 IPR001841 -
Lal9g0302 172 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Lal9g0302 172 Pfam Ring finger domain 110 154 IPR001841 -
Lal9g0302 172 SUPERFAMILY RING/U-box 111 157 - -
Lal9g0302 172 CDD RING-H2_PA-TM-RING 111 154 - -
Lal9g0302 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 159 IPR013083 -
Lal9g0302 172 PANTHER RING-H2 FINGER PROTEIN ATL57 36 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0302 Lal-Chr9 1934988 1935506 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0302 57 158 C3H Transcription Factor Family AT2G27940 34.532 6.26e-20 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0302 - - lang:109354071 229.95