Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0300 ATGGGTCAGATCCATTACTCTGAAAAATACTTTGATGATACTAATGAATATAGGCACGTGGTTCTGCCTCCTGAAGTCGCAAAACTGCTCCCTAAGAATCGTCTTCTCTCTGAAAATGAGTGGCGTGCAATTGGGGTTCAGCAGAGCCGTGGGTGGGTTCACTATGCAATTCATCGCCCAGAGCCACACATAATGCTTTTTAGGAGGCCTTTGAATTTTCAGCAGTAA 228 0.4474 MGQIHYSEKYFDDTNEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNFQQ 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0300 75 Pfam Cyclin-dependent kinase regulatory subunit 4 70 IPR000789 GO:0016538
Lal9g0300 75 Gene3D - 1 75 IPR036858 GO:0016538
Lal9g0300 75 SUPERFAMILY Cell cycle regulatory proteins 1 74 IPR036858 GO:0016538
Lal9g0300 75 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 1 75 - -
Lal9g0300 75 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT 1 75 - -
Lal9g0300 75 PRINTS Cyclin-dependent kinase regulatory subunit signature 3 17 IPR000789 GO:0016538
Lal9g0300 75 PRINTS Cyclin-dependent kinase regulatory subunit signature 18 32 IPR000789 GO:0016538
Lal9g0300 75 PRINTS Cyclin-dependent kinase regulatory subunit signature 40 54 IPR000789 GO:0016538
Lal9g0300 75 PRINTS Cyclin-dependent kinase regulatory subunit signature 55 69 IPR000789 GO:0016538
Lal9g0300 75 SMART CKS_2 3 72 IPR000789 GO:0016538
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0300 Lal-Chr9 1918923 1922765 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0300 1 75 Core Cell Cycle Gene Families AT2G27970 92.000 1.69e-49 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0300 K02219 - dcr:108218560 159.073
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0300 9 1918923 1922765 Lal9g0300 9 1918923 1922765 ECH
Lal1g0406 1 2499038 2500356 Lal9g0300 9 1918923 1922765 LSH