Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal9g0297 | ATGGAGAAGGGTCAAGGATTGGGCACAGAAGAAGATTTGGTGATCATGGCAAAGGGAAAAAGGACCAAACGGTTGAGGCTTTTATCTCCTAATTGTGGTGTTGCCGGTGCCACATATACCCACTCAAGTGTTAATTCTGAGGATAATTCCTCAACCACCACTTATGAAAGTACTGATCGAGAAGATCAAGATATGGCTAATTGTTTGATCCTTCTCGCTAGAGGAGGATCAAATTCCAATCACCATGGTCATCAAAAAGAGGATGATAATGATGAAGGTAATAACAACAAGCTAGAGAAGGATGGTAAGAGCACAACTAGTACTGAAAAATCTGTTGAGATATCTACCTCTACAAATACTAACAAAGGTGGTTCCTATATTTATGAGTGCAAGACTTGTAACCGAACCTTCCCTTCTTTTCAAGCGTTGGGTGGTCATAGAGCTAGTCACAAAAGGCCCAAGCTCATGCTCATAGAAGAAAAGAAATTGCCACAACTACAACTACAACCACAACCACATGTGATTATGGATTATGATCATTTTAAAGAAGCTGAGCAACCACACATCAAACCTGACCTTTCAATTTCCATTCAATTAGAGAACCATGCCCACAAGGCTTTCCATATCAACAAGGCCAAGATTCATGAATGTTCCATATGTGGTTCAGAATTCACATCAGGACAAGCATTAGGTGGACACATGAGGAGGCATAGAGCCACAAACAATACAACTCAGGTGGTTGCAGCACCAGTGCCGGCGTTGCAAGTGGAAGTTCAGCACCGGAGGAAATTATTAGAATTTGATCTTAACCTTCCAGCACCGGAAGAGGATCTTCCAGAGACCAAGTTTCAGTTTACGGCAACTCAAAATCCTATGGTGCTGTCTGCTTCTCCGGCTTTGGTGGGTTGCCATTATTAG | 918 | 0.4227 | MEKGQGLGTEEDLVIMAKGKRTKRLRLLSPNCGVAGATYTHSSVNSEDNSSTTTYESTDREDQDMANCLILLARGGSNSNHHGHQKEDDNDEGNNNKLEKDGKSTTSTEKSVEISTSTNTNKGGSYIYECKTCNRTFPSFQALGGHRASHKRPKLMLIEEKKLPQLQLQPQPHVIMDYDHFKEAEQPHIKPDLSISIQLENHAHKAFHINKAKIHECSICGSEFTSGQALGGHMRRHRATNNTTQVVAAPVPALQVEVQHRRKLLEFDLNLPAPEEDLPETKFQFTATQNPMVLSASPALVGCHY | 305 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal9g0297 | 305 | Gene3D | Classic Zinc Finger | 194 | 262 | - | - | |
Lal9g0297 | 305 | MobiDBLite | consensus disorder prediction | 38 | 53 | - | - | |
Lal9g0297 | 305 | MobiDBLite | consensus disorder prediction | 38 | 60 | - | - | |
Lal9g0297 | 305 | Pfam | C2H2-type zinc finger | 128 | 153 | - | - | |
Lal9g0297 | 305 | Pfam | C2H2-type zinc finger | 215 | 239 | - | - | |
Lal9g0297 | 305 | SUPERFAMILY | beta-beta-alpha zinc fingers | 125 | 155 | IPR036236 | - | |
Lal9g0297 | 305 | MobiDBLite | consensus disorder prediction | 75 | 118 | - | - | |
Lal9g0297 | 305 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 217 | 237 | IPR013087 | - | |
Lal9g0297 | 305 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 215 | 242 | IPR013087 | - | |
Lal9g0297 | 305 | PANTHER | ZINC FINGER PROTEIN ZAT5 | 10 | 305 | - | - | |
Lal9g0297 | 305 | SMART | c2h2final6 | 128 | 150 | IPR013087 | - | |
Lal9g0297 | 305 | SMART | c2h2final6 | 215 | 237 | IPR013087 | - | |
Lal9g0297 | 305 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 128 | 155 | IPR013087 | - | |
Lal9g0297 | 305 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 130 | 150 | IPR013087 | - | |
Lal9g0297 | 305 | MobiDBLite | consensus disorder prediction | 80 | 107 | - | - | |
Lal9g0297 | 305 | SUPERFAMILY | beta-beta-alpha zinc fingers | 212 | 241 | IPR036236 | - | |
Lal9g0297 | 305 | PANTHER | ZINC FINGER PROTEIN, PUTATIVE-RELATED | 10 | 305 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal9g0297 | Lal-Chr9 | 1909193 | 1910110 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal9g0297 | 1 | 305 | C2H2 Transcription Factor Family | AT2G28200 | 39.759 | 1.63e-55 | 180 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Lal9g0297 | zf-C2H2_6 | 2.4e-11 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal9g0297 | - | - | aprc:113858527 | 280.411 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lal9g0297 | 9 | 1909193 | 1910110 | Lal9g0297 | 9 | 1909193 | 1910110 | ECH | |
Lal9g0297 | 9 | 1909193 | 1910110 | Lal12g0788 | 12 | 6129885 | 6130991 | ECH | |
Lal9g0297 | 9 | 1909193 | 1910110 | Lal13g0896 | 13 | 6178285 | 6180093 | ECH | |
Lal9g0297 | 9 | 1909193 | 1910110 | Lal24g0712 | 24 | 5314441 | 5319520 | ECH | |
Lal2g0316 | 2 | 1887267 | 1888184 | Lal9g0297 | 9 | 1909193 | 1910110 | ECH | |
Lal20g0117 | 20 | 767694 | 768548 | Lal9g0297 | 9 | 1909193 | 1910110 | ECH | |
Lal1g1797 | 1 | 20297015 | 20297863 | Lal9g0297 | 9 | 1909193 | 1910110 | ECH | |
Lal13g0896 | 13 | 6178285 | 6180093 | Lal9g0297 | 9 | 1909193 | 1910110 | ECH | |
Lal1g0404 | 1 | 2487392 | 2488330 | Lal9g0297 | 9 | 1909193 | 1910110 | LSH | |
Lal2g0316 | 2 | 1887267 | 1888184 | Lal9g0297 | 9 | 1909193 | 1910110 | LSH | |
Lal25g0208 | 25 | 1417109 | 1417975 | Lal9g0297 | 9 | 1909193 | 1910110 | PCT | |
Lal10g1218 | 10 | 18542256 | 18543194 | Lal9g0297 | 9 | 1909193 | 1910110 | PCT | |
Lal9g0297 | 9 | 1909193 | 1910110 | Lal25g0208 | 25 | 1417109 | 1417975 | PCT | |
Lal9g0297 | 9 | 1909193 | 1910110 | Lal10g1218 | 10 | 18542256 | 18543194 | PCT |