Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0297 ATGGAGAAGGGTCAAGGATTGGGCACAGAAGAAGATTTGGTGATCATGGCAAAGGGAAAAAGGACCAAACGGTTGAGGCTTTTATCTCCTAATTGTGGTGTTGCCGGTGCCACATATACCCACTCAAGTGTTAATTCTGAGGATAATTCCTCAACCACCACTTATGAAAGTACTGATCGAGAAGATCAAGATATGGCTAATTGTTTGATCCTTCTCGCTAGAGGAGGATCAAATTCCAATCACCATGGTCATCAAAAAGAGGATGATAATGATGAAGGTAATAACAACAAGCTAGAGAAGGATGGTAAGAGCACAACTAGTACTGAAAAATCTGTTGAGATATCTACCTCTACAAATACTAACAAAGGTGGTTCCTATATTTATGAGTGCAAGACTTGTAACCGAACCTTCCCTTCTTTTCAAGCGTTGGGTGGTCATAGAGCTAGTCACAAAAGGCCCAAGCTCATGCTCATAGAAGAAAAGAAATTGCCACAACTACAACTACAACCACAACCACATGTGATTATGGATTATGATCATTTTAAAGAAGCTGAGCAACCACACATCAAACCTGACCTTTCAATTTCCATTCAATTAGAGAACCATGCCCACAAGGCTTTCCATATCAACAAGGCCAAGATTCATGAATGTTCCATATGTGGTTCAGAATTCACATCAGGACAAGCATTAGGTGGACACATGAGGAGGCATAGAGCCACAAACAATACAACTCAGGTGGTTGCAGCACCAGTGCCGGCGTTGCAAGTGGAAGTTCAGCACCGGAGGAAATTATTAGAATTTGATCTTAACCTTCCAGCACCGGAAGAGGATCTTCCAGAGACCAAGTTTCAGTTTACGGCAACTCAAAATCCTATGGTGCTGTCTGCTTCTCCGGCTTTGGTGGGTTGCCATTATTAG 918 0.4227 MEKGQGLGTEEDLVIMAKGKRTKRLRLLSPNCGVAGATYTHSSVNSEDNSSTTTYESTDREDQDMANCLILLARGGSNSNHHGHQKEDDNDEGNNNKLEKDGKSTTSTEKSVEISTSTNTNKGGSYIYECKTCNRTFPSFQALGGHRASHKRPKLMLIEEKKLPQLQLQPQPHVIMDYDHFKEAEQPHIKPDLSISIQLENHAHKAFHINKAKIHECSICGSEFTSGQALGGHMRRHRATNNTTQVVAAPVPALQVEVQHRRKLLEFDLNLPAPEEDLPETKFQFTATQNPMVLSASPALVGCHY 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0297 305 Gene3D Classic Zinc Finger 194 262 - -
Lal9g0297 305 MobiDBLite consensus disorder prediction 38 53 - -
Lal9g0297 305 MobiDBLite consensus disorder prediction 38 60 - -
Lal9g0297 305 Pfam C2H2-type zinc finger 128 153 - -
Lal9g0297 305 Pfam C2H2-type zinc finger 215 239 - -
Lal9g0297 305 SUPERFAMILY beta-beta-alpha zinc fingers 125 155 IPR036236 -
Lal9g0297 305 MobiDBLite consensus disorder prediction 75 118 - -
Lal9g0297 305 ProSitePatterns Zinc finger C2H2 type domain signature. 217 237 IPR013087 -
Lal9g0297 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 215 242 IPR013087 -
Lal9g0297 305 PANTHER ZINC FINGER PROTEIN ZAT5 10 305 - -
Lal9g0297 305 SMART c2h2final6 128 150 IPR013087 -
Lal9g0297 305 SMART c2h2final6 215 237 IPR013087 -
Lal9g0297 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 128 155 IPR013087 -
Lal9g0297 305 ProSitePatterns Zinc finger C2H2 type domain signature. 130 150 IPR013087 -
Lal9g0297 305 MobiDBLite consensus disorder prediction 80 107 - -
Lal9g0297 305 SUPERFAMILY beta-beta-alpha zinc fingers 212 241 IPR036236 -
Lal9g0297 305 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 10 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0297 Lal-Chr9 1909193 1910110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0297 1 305 C2H2 Transcription Factor Family AT2G28200 39.759 1.63e-55 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal9g0297 zf-C2H2_6 2.4e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0297 - - aprc:113858527 280.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0297 9 1909193 1910110 Lal9g0297 9 1909193 1910110 ECH
Lal9g0297 9 1909193 1910110 Lal12g0788 12 6129885 6130991 ECH
Lal9g0297 9 1909193 1910110 Lal13g0896 13 6178285 6180093 ECH
Lal9g0297 9 1909193 1910110 Lal24g0712 24 5314441 5319520 ECH
Lal2g0316 2 1887267 1888184 Lal9g0297 9 1909193 1910110 ECH
Lal20g0117 20 767694 768548 Lal9g0297 9 1909193 1910110 ECH
Lal1g1797 1 20297015 20297863 Lal9g0297 9 1909193 1910110 ECH
Lal13g0896 13 6178285 6180093 Lal9g0297 9 1909193 1910110 ECH
Lal1g0404 1 2487392 2488330 Lal9g0297 9 1909193 1910110 LSH
Lal2g0316 2 1887267 1888184 Lal9g0297 9 1909193 1910110 LSH
Lal25g0208 25 1417109 1417975 Lal9g0297 9 1909193 1910110 PCT
Lal10g1218 10 18542256 18543194 Lal9g0297 9 1909193 1910110 PCT
Lal9g0297 9 1909193 1910110 Lal25g0208 25 1417109 1417975 PCT
Lal9g0297 9 1909193 1910110 Lal10g1218 10 18542256 18543194 PCT