Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0295 ATGCTTTCTATTTCATTCCGACCATTCCTGGTTCACCCCATTCTCCCTTTTCCCATTAGGGTTCCCTCTCTCTTCTCTCTTCCCCGCACCACCATGTCTAAACCACCCTCCGCCTTCGACGCTCTCATGTCCGCCGCACGCGCCGCCGCATCCAAGAAGAAACCCCCTCCTTCAACTTCCTCTTCCCCCAAGAAGCGTAAATCCCCACCTCCCCCGACCCCGTCTCCTGCTTCGCCCTTAAACCCTAGCACTCTCATAACCCCCGATTCCTCTGCGCCACCTGCACCCGAAACCCTAGAAATTCCAGAGAAACCAAATGACTCGGTGAAACCCGAAACGGTGAAGAAGATTCGCAATGTGACTAATTCTTCGCTGGAGAAGATCGTTGAATTGAAGAAACTAGCTCCATTGCTGAAAAAGAAACCGTCTGAGTTCAATCCCAGCTCTGTAGCTACCTGGGAGAAGGGTGATCCCGTTCCGTTTCTTTTCCTTTCTTTAGCATTTGATATGATTTCAAAAGAATCCGGAAGAATCTTGATTACGGATATAGTGTGCAATCTTTTAAGGACTGTGATATATGCTACACCTGAGGACTTGATCCCGGTTGTTTATCTTTCTGCGAATAGGATTGCACCGGCACATGTTGGTTTGGAATTGGGAATAGGAGATGCTTCCATCATCAAGGCGCTTGCTGAGGCATGTGGAAGGACTGAAGCGCAAATTAAGAAGCAGTATAAGGAAAAAGGTGATTTGGGTATTGTTGCCCAAGCAAGTCGTTCGTCTCAGTCTATGATGCGGAAACCTGATGCCTTGACTATTAGGAAGGTTTTCAAAACCTTTCATCTTATTGCCAAGGAATCTGGAAAAGACAGTCAAGAGAAGAAAAAGAATCATATCAAGGCACTTCTTGTTGCTGCAACTGACTGTGAACCTCAATATCTAATCCGCCTGTTACAGGCTAAGTTGCGAATTGGGTATGCTGAGCAAACTCTCCTAGCTGCATTAGGCCAAGCTGCAGTATACACTGAAGAACATTCTAAAGCGCCTTCTGAAATTCAGTCTCCTTTCGAAGAGGCTTCAAAGATTGTTAAACAAGTCTATTCAGTTCTTCCAGACTATGATAAAATAGTATCTGCACTGCTTACGCATGGTGTATGGGAGCTTCCACAGAGATGCAATTTTACTCCTGGTGTTCCAGTTGGTCCAATGCTGTCAAAAGCAACGAAAGGTGTATCTGAAGTTCTAAATAAATTCCAGGACGTGGAGTTTACCTGTGAATATAAATATGATGGAGAGCGTGCCCAGATACATTACATGGAAAATGGCTCGGTTGAGGTTTACAGTAGAAATGCAGAACGGAACACTGGGAAGTTTCCTGATGTTGTTGCTGCAGTTTCAAGGTTAAAGAAATCAAATGTATCATCATTTATTCTTGATTGTGAACTTGTTGCATATGATCGTGCTAAGAAGAAAATCCTTCCTTTCCAGGTTCTTAGTACCCGGGCTCGCAAAAATGTTGCTATTGACGATATAAAGGTTGATGTTTGCATATTTTCTTTTGATTTGTTGTATCTTAATGGAAAAGCACTTATTCAGGACAACCTGAAAATCCGTAGAGAGCATCTCTATGCCTCTTTTGAGGAAGAACCTGGTTTCTTTCAGTTTGCAACAACAATAATATCAAATGATGTTGAGGAAGTACAAAAGTTTCTTGACCAAGCTGTTGACGCAAGTTGTGAGGGATTAATTATTAAAACATTAAATGAAGATGCTACTTATGAACCCTCCAAGCGGTCACTAAACTGGCTAAAACTGAAGAAAGATTATATGGAAAATATAGGGGACTCACTAGATTTGGTACCTATTGCTGCTTTCCATGGTCGTGGGAAACGTACAGGAGTCTATGGTGCCTTTCTCCTTGCTTGCTATGACAACAATAATGAGGAATTTCAAAGTATTTGTAAAATAGGAACTGGATTCTCTGAAGAAATGCTTGAAGAGCGATCGGCCAGTCTTCGTTCTAAAGTGATTCCCAAGCCAAAGGCATACTATACATATGCAGAGACAATCAATCCTGATGTCTGGTTTGAAACCAGTGAGGTATGGGAGGTGAAAGCTGCAGACCTGACCATTAGCCCCGTTTACCGTGCTGCAGTGGGCATAGTAGATCCGAATAAGGGCATTTCACTTCGATTTCCGCGTCTACTTCGTGTGCGACCTGACAAAACTCCAGAAGAGGCCTCATCATCTGAGCAGGTTGCTGATATGTATAATGCTCAAAAACATAATAACCCGAACAACCAAGACGGCGATGAAGATGATTGA 2325 0.4327 MLSISFRPFLVHPILPFPIRVPSLFSLPRTTMSKPPSAFDALMSAARAAASKKKPPPSTSSSPKKRKSPPPPTPSPASPLNPSTLITPDSSAPPAPETLEIPEKPNDSVKPETVKKIRNVTNSSLEKIVELKKLAPLLKKKPSEFNPSSVATWEKGDPVPFLFLSLAFDMISKESGRILITDIVCNLLRTVIYATPEDLIPVVYLSANRIAPAHVGLELGIGDASIIKALAEACGRTEAQIKKQYKEKGDLGIVAQASRSSQSMMRKPDALTIRKVFKTFHLIAKESGKDSQEKKKNHIKALLVAATDCEPQYLIRLLQAKLRIGYAEQTLLAALGQAAVYTEEHSKAPSEIQSPFEEASKIVKQVYSVLPDYDKIVSALLTHGVWELPQRCNFTPGVPVGPMLSKATKGVSEVLNKFQDVEFTCEYKYDGERAQIHYMENGSVEVYSRNAERNTGKFPDVVAAVSRLKKSNVSSFILDCELVAYDRAKKKILPFQVLSTRARKNVAIDDIKVDVCIFSFDLLYLNGKALIQDNLKIRREHLYASFEEEPGFFQFATTIISNDVEEVQKFLDQAVDASCEGLIIKTLNEDATYEPSKRSLNWLKLKKDYMENIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNNNEEFQSICKIGTGFSEEMLEERSASLRSKVIPKPKAYYTYAETINPDVWFETSEVWEVKAADLTISPVYRAAVGIVDPNKGISLRFPRLLRVRPDKTPEEASSSEQVADMYNAQKHNNPNNQDGDEDD 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0295 774 Gene3D - 611 773 IPR012340 -
Lal9g0295 774 ProSiteProfiles ATP-dependent DNA ligase family profile. 508 644 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lal9g0295 774 PANTHER DNA LIGASE 1 53 774 - -
Lal9g0295 774 Pfam DNA ligase N terminus 160 335 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lal9g0295 774 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 218 757 IPR000977 GO:0003910|GO:0005524|GO:0071897
Lal9g0295 774 Gene3D DNA ligase/mRNA capping enzyme 431 556 - -
Lal9g0295 774 Pfam ATP dependent DNA ligase C terminal region 631 742 IPR012309 GO:0003910|GO:0006281|GO:0006310
Lal9g0295 774 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 142 393 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lal9g0295 774 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 426 434 IPR016059 GO:0003909
Lal9g0295 774 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 394 612 - -
Lal9g0295 774 MobiDBLite consensus disorder prediction 740 774 - -
Lal9g0295 774 Gene3D - 137 404 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lal9g0295 774 SUPERFAMILY Nucleic acid-binding proteins 614 760 IPR012340 -
Lal9g0295 774 Gene3D - 412 610 - -
Lal9g0295 774 MobiDBLite consensus disorder prediction 45 112 - -
Lal9g0295 774 Pfam ATP dependent DNA ligase domain 402 606 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lal9g0295 774 ProSitePatterns ATP-dependent DNA ligase signature 2. 580 606 IPR016059 GO:0003909
Lal9g0295 774 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 53 774 - -
Lal9g0295 774 CDD OBF_DNA_ligase_I 614 759 - -
Lal9g0295 774 MobiDBLite consensus disorder prediction 749 765 - -
Lal9g0295 774 CDD Adenylation_DNA_ligase_I_Euk 391 609 - -
Lal9g0295 774 MobiDBLite consensus disorder prediction 62 81 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0295 24 773 Core DNA Replication Machinery Family AT1G08130 67.150 0.0 1045
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0295 K10747 - gmx:100783155 1155.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0295 9 1893092 1900171 Lal9g0295 9 1893092 1900171 ECH