Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0289 ATGGGAAGAGCTCCTTGCTGTGACAAGGCCAATGTTAAGAGAGGACCATGGTCACCTGAGGAAGATTCAAAGCTGAAAGAGTACATAGAGAAACATGGGACTGGGGGAAATTGGATTGCTCTTCCTCAGAAAGCTGGTCTCAAGAGATGTGGGAAAAGTTGCAGATTGAGATGGCTTAACTATCTCAGGCCCAACATTAGGCATGGAGAATTCTCTGATGAGGAAGACAGAATAATTTGCAGCCTCTATGTTAATATTGGGAGCAGGTGGTCAATTATAGCTGCTCAGTTGCCAGGGAGGACTGACAATGATATCAAGAACTACTGGAACACCAAGTTAAAGAAAAAACTCATGGGTTTGCTTCCTTTATCTCATCAAAGAAAACCTCCATTTCCATCTTCACAACATCAAAACCCTCCACCCTCTCCTTCAATGTACAGTGACTACAACTGCAGCAGCTCTTATTACATCCCACAAACCTTATCCTTCACTGATCTTGAACCTATTTCACTTCCTTCAACTAACTTTGCAAGCACAAGTTGCACAACAACCTCACTTTCTCTCCCCTTTTACCAAAACCAAGACTCTACAGTGGTTAGTACTAGTGCTATTAGTCCCATGCAATGTTACTACCCAATGTTTGGAAGTGAAGGGAGTTGCAGTTCCTCTGATGGGAGCTGCACTCAGATCAAGCAAGAAGAGCCAGGTTATCAAAGCTACATGTCCACCTCATTTGATGAGTTCAACAACAAGGCTATGTTTAGTTACAACATTAATGGTCGAGGTGGAAATATTAATCAATGGGATGAAAAGTCAAGTGGATGCTTTGGTCAAACACAAACTCCTTTAGAGAATTATTATGATCTTGAGGATATTAAGCAAATGATTAATAGTGGTAGCAGCAGTTTCATTAATATTGATGAAAACAAGAATGAGGAGAATTGCATGTACTACTACCCAGATGAGTGCAACTGA 975 0.4113 MGRAPCCDKANVKRGPWSPEEDSKLKEYIEKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIRHGEFSDEEDRIICSLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMGLLPLSHQRKPPFPSSQHQNPPPSPSMYSDYNCSSSYYIPQTLSFTDLEPISLPSTNFASTSCTTTSLSLPFYQNQDSTVVSTSAISPMQCYYPMFGSEGSCSSSDGSCTQIKQEEPGYQSYMSTSFDEFNNKAMFSYNINGRGGNINQWDEKSSGCFGQTQTPLENYYDLEDIKQMINSGSSSFINIDENKNEENCMYYYPDECN 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0289 324 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lal9g0289 324 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Lal9g0289 324 PANTHER TRANSCRIPTION FACTOR RAX3 1 302 - -
Lal9g0289 324 SMART sant 67 115 IPR001005 -
Lal9g0289 324 SMART sant 13 64 IPR001005 -
Lal9g0289 324 PANTHER OS09G0431300 PROTEIN 1 302 - -
Lal9g0289 324 Gene3D - 70 139 - -
Lal9g0289 324 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lal9g0289 324 Gene3D - 7 68 - -
Lal9g0289 324 CDD SANT 16 62 IPR001005 -
Lal9g0289 324 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lal9g0289 324 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lal9g0289 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Lal9g0289 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0289 Lal-Chr9 1822695 1824522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0289 1 119 MYB Transcription Factor Family AT5G57620 89.076 4.10e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal9g0289 Myb_DNA-binding 7.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0289 K09422 - gmx:100796382 376.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0289 9 1822695 1824522 Lal9g0289 9 1822695 1824522 ECH
Lal25g0197 25 1350555 1352243 Lal9g0289 9 1822695 1824522 PCT
Lal8g0159 8 1085610 1087697 Lal9g0289 9 1822695 1824522 PCT
Lal9g0289 9 1822695 1824522 Lal25g0197 25 1350555 1352243 PCT
Lal9g0289 9 1822695 1824522 Lal8g0159 8 1085610 1087697 PCT