Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0288 ATGCAGAAATCAGGATATGGCCGTGACGGAATATACAGATCACTAAGACCTTCTCTTATTCTCCCTAAAGATCCCAACCTCTCCCTTGTCTCTTTCTTGTTTTCATCTTTCTCTTCTTTCTCTAACAAAACCGCACTCGTTGATGCTGACTCACTTGAATCTCTCACCTATTCACAACTCAAAAACAAAGTCATCAAACTCGCTCATGCTTTCCACTACAACCTTGGTATCAACAAAAACGATGTTGTCCTTTTGTTTGCCCCCAACAGCATTAACTTCCCCATATGCTTTCTCGCTGCTACATCCATTGGCGCTGTTGTCTCCACCGTTAACCCTATCTACACTGTTGCTGAGATATCCAAGCAGGTTAAAGATTCTAACCCAAAGCTCATAATCACTGTTTCTGAGTTATGGGACAAGGTGAAGGGTTTCAACCTTCCCATATTAACTCTCGGTATGAAAACAAAAAACATGGATTCCAGTGTAAAGATCACAACTTTGAACGAGTTAATCAATATGTCAGGTTCTCCAACGGAGTTACCAGTAAAGGACGTGAAACAAAGCGACACGGCATCGCTTTTGTATTCTTCTGGAACGACGGGTGTGAGCAAAGGAGTGGTTTTGACGCATGGAAACTATATTGCAGCAGCTTTGATGATTGGAATGGATGAGGATATGGCTGGAGAGGAAGATAACGTGTACCTTTGTGTTTTGCCAATGTTTCATGTGTTTGGGCTTGCGGTGATTACGTACTCGGTGCTTACAAGAGGGAATAAATTGGTGTCATTGAGTAGGTTTGAGTTTGAAATGTTTTTGAAAACGATTCAGAAATATAAGGTGACAAATTTGTGGGTTGTGCCTCCTATTGTTCTTGCTATGGCGAAACAAAGTGTGGTTAAGAATTATGATCTATCTTCGTTGAAGCGTATTGGGTCTGGTGCTGCTCCTCTTGGGAAAGAGTTGATGGAGGATGTTGCTAAGCGTTTTCCTCATGCTACTATTGCTCAGGGCTATGGTATGACAGAAACTACAGGTATTGTTTCTGTGGAGAATCCAAGAGTAGGGATTCGTCATACAGGTTCAACAGGAATGCTAGTTTCAGGAGTTGAAGCTCAAATAGTCAGCGTGGAAACACAGAAGCCTCTCCCTCCTAAAGAGATGGGGGAGATATGGGTACGGGGTGCTAATATGATGCAAGGTTATCATAACAATCCACAAGCCACACAATCTACTATAGATAAAAATGGGTGGGTACATACTGGAGATCTTGGATATTTTGATGAGAATGGACTCCTTTTCGTAGTTGACCGGATCAAAGAACTGATCAAATATAAGGGTCTTCAGAACCCTTCTGGTTATGTTGCACCAGCAGAACTAGAAGGGCTTCTCATTTCTCACCCTGAAATACTCGATGCTGTTGTCGTCCCATATCCTGATGATGAGGCTGGTGAGGTTCCGATTGCCTATGTCGTTCGTTCACCCAACAGCTCGCTGAGTGAAGAACAAATTAAGAAATTTATTGCTGATCAGGTTGCACCTTTCAAAAGATTGAGAAGGATAACATTCATCAGCAGTATTCCTAAGACAGCTTCAGGAAAAATTCTCAGAAGAGAGCTCATTGATAAAGCACGATCTAAAATATAA 1644 0.4191 MQKSGYGRDGIYRSLRPSLILPKDPNLSLVSFLFSSFSSFSNKTALVDADSLESLTYSQLKNKVIKLAHAFHYNLGINKNDVVLLFAPNSINFPICFLAATSIGAVVSTVNPIYTVAEISKQVKDSNPKLIITVSELWDKVKGFNLPILTLGMKTKNMDSSVKITTLNELINMSGSPTELPVKDVKQSDTASLLYSSGTTGVSKGVVLTHGNYIAAALMIGMDEDMAGEEDNVYLCVLPMFHVFGLAVITYSVLTRGNKLVSLSRFEFEMFLKTIQKYKVTNLWVVPPIVLAMAKQSVVKNYDLSSLKRIGSGAAPLGKELMEDVAKRFPHATIAQGYGMTETTGIVSVENPRVGIRHTGSTGMLVSGVEAQIVSVETQKPLPPKEMGEIWVRGANMMQGYHNNPQATQSTIDKNGWVHTGDLGYFDENGLLFVVDRIKELIKYKGLQNPSGYVAPAELEGLLISHPEILDAVVVPYPDDEAGEVPIAYVVRSPNSSLSEEQIKKFIADQVAPFKRLRRITFISSIPKTASGKILRRELIDKARSKI 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0288 547 SUPERFAMILY Acetyl-CoA synthetase-like 22 545 - -
Lal9g0288 547 Pfam AMP-binding enzyme 39 444 IPR000873 -
Lal9g0288 547 Pfam AMP-binding enzyme C-terminal domain 458 533 IPR025110 -
Lal9g0288 547 ProSitePatterns Putative AMP-binding domain signature. 193 204 IPR020845 -
Lal9g0288 547 Gene3D - 440 546 IPR045851 -
Lal9g0288 547 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 4 546 - -
Lal9g0288 547 Gene3D - 10 439 IPR042099 -
Lal9g0288 547 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 4 546 - -
Lal9g0288 547 CDD 4CL 43 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0288 Lal-Chr9 1814908 1818853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0288 1 547 Monolignol Biosynthesis Gene Families AT4G05160 66.727 0.0 774
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0288 K01904 - gmx:100808944 788.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0288 9 1814908 1818853 Lal9g0288 9 1814908 1818853 ECH
Lal10g1222 10 18564202 18566653 Lal9g0288 9 1814908 1818853 PCT
Lal9g0288 9 1814908 1818853 Lal10g1222 10 18564202 18566653 PCT