Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0283 ATGATCAATAGAGATATAAGGAAGGTGGTTGATTTCGTTGAAATTGTTGTTATATTGAGTTGTATTGTTGGGCCATTGCAAGTTTCATGTCAGAACAACAATGATGATGGTGGTGGTGGTGCTGGGGTTCAGATATTGGCCCAGGAACTATACCGTGCCAGCATGACCAACATCACCAAGGTCTTGAAAGCCACAATAAAAGAAGAGTTGGGTTTTTGCATAGTTGATGTGGACGCAGATTGGGATGGGGCGTTCAATTTCACCAAAGATCTGAGCTTTTTGACCATGTGTTCCCAGAAATTAAAGGGTGATATAACACAGCGTATTTGCACAGCAGCAGAAATAGAAGCCTATGCTAGAAGTTTTTCAAGGGAAACCAAATCAGCTTTCCTGAAGCCCAACATAAACTGTAATATGAGTTCATGGCTAAATGGATGCGAGCCCGGGTGGGCATGTAAAGCTAATCAGAAAGTAGAGGTAAACAATAACAAGAAGGAGATACCTGTTAGATCTGTTGATTGCCAACCTTGTTGTGAAGGTTTCTTCTGCCCTCATGGTATCACCTGCATGATACCCTGCCCATTAGGCTCTTACTGTCCACGTGCCGAACTCAATAAAACTAGTGGAGTATGTGCACCATATCGGTATCAGATACCTCCTGGAAAGTTTAACCATACTTGTGGAGGAGCAGATATTTGGGCAGACATTACTAGTAGTGCAGATGTATTCTGTTCATCAGGATCATTCTGCCCATCAACTATAATAAAAAATCCTTGCAACAAAGGGTTTTACTGCAGAACAGGTTCTACTGCCCAAGAGCGATGTTTCAGATTGGCAAGCTGTGAGCCTAAATCAGCAAATCAGAATATTACTGCATATGGTGTCCTGGCTGGGTTGTGTTTCATGCTTATTATCATATACAACTGTTCTGATCAAGTACTTGCAACTAGAGAAAGAAGACAAGCAAAATCAAGAGAAAGGGCTGCTCAAAGTGTAAGAGAAACACAAGCACGCGAAAAATGGAAATCTGCAAAGGATATTGCTAAGAAACATGCTACTGAACTTCAGTCACAATTGTCGCGTACTTTTTCTCGCAAAAAATCTACAAAGGCGCCGGAATTTAAAGGGGTCATACCACCAATGGCTGGTACATCAAAAGCAAAGAAAAAGGATAAAAACAACCTCGCAAAAATAATAAATGAAATTGAGGAAAACCCTGACAGTGAAGAAGGGTTTAATGTTCAGATAGGAGATAAAAATATCAAAAAAGCACCAAGGGGTAAGCAATTGCATACTCAAAGCCAAATGTTCAGGTATGCATATGGTCAGATAGAAAAAGAAAAGGCCTTACAGGAACAAAATAAGAACTTGACCTTCTCTGGAGTTATTTCAATGGCTAGTGATATTGAGATAAGGAAGAGGCCTACAATTGAGGTTGCTTTTAAGGACTTAACCCTTACTTTGAAAGGTAAAAACAAACATCTATTAAGAAGTGTGACTGGGAAATTATACCCTGGTAGAGTTTCAGCAGTCATGGGTCCTTCCGGGGCCGGTAAGACAACATTTCTTTCTGCTTTAACTGGAAAAGCAACTGGATGTCACACAACTGGCCAAGTTCTTGTAAATGGCCAGGAATCATCGATTACATCATACAAGAAGATCATCGGTTTTGTGCCACAAGATGATATTGTGCATGGAAATTTGACAGTGGAGGAGAATCTGTGGTTCAGTGCTAGATGCAGACTCTCTGCTGATTTACCAAAAGAAGAGAAGGTTTTGGTGGTTGAAAGAGTCATTGAGGCCTTGGGTCTGCAGGCAATAAGAGATTCTCTGGTTGGGACAGTGGAGAAGCGAGGAATATCAGGAGGTCAAAGGAAGAGAGTAAATGTTGGACTTGAAATGGTTATGGAACCTTCACTTTTAATTTTAGATGAACCTACTTCTGGTTTGGATAGCTCATCTTCTCAGTTACTTCTTAGAGCACTTAGACGCGAAGCTCTTGAAGGAGTAAACATATGTATGGTCCTTCATCAACCAAGTTACACCTTGTTCAGGATGTTTGATGATTTTATACTACTAGCTAAAGGAGGTCTTACAGTGTATCATGGACCTGTGAACAAAGTGGAAGAATACTTTTCCAGCATAGGAATTGTTGTCCCTGACAGAGTGAACCCTCCAGATTACTACATTGACATTTTAGAAGGAATACTAAAACTACCAGAAAGTTCAGGAGTGAACTATAAGCAACTACCTGTTAGATGGATGCTACACAATGGGTACCCCGTGCCGATGGATATGCTAGCAACTGTTGAAGGAATGGCGACCCCTGGTGAAGGTTCTGCACATGGAGCTGCTACCACAACAGGGAATGCTGATGACACTTCCTTTGCTGGAGAGCTTTGGCAGGATGTCAAGTGCAATGTTGAGCTCAAGAAGGACAAACTTCAACACAATTTCTTAAATTATTCACGTGATTTGTCTAATCGCGAAACACCTGGAACATTCACACAGTACAAATACTTCCTTGGAAGAGTTGGAAAGCAAAGGTTAAGAGAAGCTAGAACACAAGCTGTAGATTTTCTAATTTTGCTACTAGCTGGCCTCTGCCTAGGAACACTTGCCAAAGTTAGCGATGAATCGTTCGGATCAACCGCACTCCTTTCAAAGATTGCTGCTTTGAGATCCTTCTCATTGGATAAGTTACACTATTGGAGGGAGAGTGCTTCAGGCATGAGTAGTTTGGCTTACTTTCTTTCAAAGGATACGGTTGATCATTTCAGTACAATTATCAAACCTCTGGTTTATCTATCTATGTTCTATTTCTTCAACAATCCAAGATCATCAGTCACAGATAACTACATGGTTCTGCTGTGCTTGGTGTATTGTGTCACTGGTGTAGCTTATGTATTGGCAATCTTCCTTCAACCTGGTCCTGCACAATTGTGGTCAGTGTTACTTCCTGTAGTTTTGACTCTGGTAGCAACCTATGATAATCAAGAAGATAGCAAATATGTGAGGTTTCTATCAGACTTGTGCTACACAAAATGGGCTCTTGAAGCATTTGTAATATCAAATGCCAAAAGATATGCTGGAGTATGGTTAATAAGCAGATGTGGTGCACTCTATGCAAGTGGTTATGATCTGAACCATTGGTATCAATGTTTAGGCCTTCTTATATTAACAGGAATAATTAGCCGCATGCTTGCTTTCTTTTGTATGATAACATTCCAGAAGAAATAG 3240 0.4065 MINRDIRKVVDFVEIVVILSCIVGPLQVSCQNNNDDGGGGAGVQILAQELYRASMTNITKVLKATIKEELGFCIVDVDADWDGAFNFTKDLSFLTMCSQKLKGDITQRICTAAEIEAYARSFSRETKSAFLKPNINCNMSSWLNGCEPGWACKANQKVEVNNNKKEIPVRSVDCQPCCEGFFCPHGITCMIPCPLGSYCPRAELNKTSGVCAPYRYQIPPGKFNHTCGGADIWADITSSADVFCSSGSFCPSTIIKNPCNKGFYCRTGSTAQERCFRLASCEPKSANQNITAYGVLAGLCFMLIIIYNCSDQVLATRERRQAKSRERAAQSVRETQAREKWKSAKDIAKKHATELQSQLSRTFSRKKSTKAPEFKGVIPPMAGTSKAKKKDKNNLAKIINEIEENPDSEEGFNVQIGDKNIKKAPRGKQLHTQSQMFRYAYGQIEKEKALQEQNKNLTFSGVISMASDIEIRKRPTIEVAFKDLTLTLKGKNKHLLRSVTGKLYPGRVSAVMGPSGAGKTTFLSALTGKATGCHTTGQVLVNGQESSITSYKKIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKEEKVLVVERVIEALGLQAIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVLHQPSYTLFRMFDDFILLAKGGLTVYHGPVNKVEEYFSSIGIVVPDRVNPPDYYIDILEGILKLPESSGVNYKQLPVRWMLHNGYPVPMDMLATVEGMATPGEGSAHGAATTTGNADDTSFAGELWQDVKCNVELKKDKLQHNFLNYSRDLSNRETPGTFTQYKYFLGRVGKQRLREARTQAVDFLILLLAGLCLGTLAKVSDESFGSTALLSKIAALRSFSLDKLHYWRESASGMSSLAYFLSKDTVDHFSTIIKPLVYLSMFYFFNNPRSSVTDNYMVLLCLVYCVTGVAYVLAIFLQPGPAQLWSVLLPVVLTLVATYDNQEDSKYVRFLSDLCYTKWALEAFVISNAKRYAGVWLISRCGALYASGYDLNHWYQCLGLLILTGIISRMLAFFCMITFQKK 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0283 1079 Pfam ABC-2 type transporter 677 1079 IPR043926 GO:0140359
Lal9g0283 1079 Pfam ABC transporter 496 648 IPR003439 GO:0005524
Lal9g0283 1079 PANTHER WHITE-BROWN COMPLEX HOMOLOG PROTEIN 30-RELATED 41 1075 - -
Lal9g0283 1079 CDD ABCG_EPDR 477 703 - -
Lal9g0283 1079 Gene3D - 468 715 IPR027417 -
Lal9g0283 1079 MobiDBLite consensus disorder prediction 323 352 - -
Lal9g0283 1079 SMART AAA_5 505 706 IPR003593 -
Lal9g0283 1079 MobiDBLite consensus disorder prediction 323 389 - -
Lal9g0283 1079 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 479 720 IPR003439 GO:0005524
Lal9g0283 1079 Coils Coil 385 405 - -
Lal9g0283 1079 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 480 718 IPR027417 -
Lal9g0283 1079 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 41 1075 - -
Lal9g0283 1079 ProSitePatterns ABC transporters family signature. 620 634 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0283 Lal-Chr9 1785396 1791414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0283 506 699 Calmodulin-binding Proteins AT2G36910 30.000 6.98e-11 64.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0283 9 1785396 1791414 Lal9g0283 9 1785396 1791414 ECH
Lal2g0303 2 1787143 1798432 Lal9g0283 9 1785396 1791414 LSH