Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0276 ATGAAGGAAGTTGTTATTGAGAAGAGTTTGGATCCGCAGCTATGGCACGCGTGCGCAGGGAGCATGATTCATATGCCTCAGTTGAACTCTAAAGTTTTTTACTTTCCACAAGGTCATGCTGAACATGCTCAAACAACCCTTGATCTCACACCCTCTTTGAGGATTCCACCACTCATTCTATGCACACTTGCCTCAGTGAAATTCATGGCAGACACTGAAACTGATGAAGTCTTCGCCAAGATGTGGTTGGTTCCTCTCAGAAATTCCAACCTTGATGAACGCAGTGATGGTGATGTGATTGAAAATTCCGAAAAGCCTGCATCTTTTGCTAAGACTTTAACTCAATCTGATGCTAATAATGGTGGGGGATTTTCTGTTCCAAGGTATTGTGCAGAAACTATTTTTCCTCGGCTTGATTACTCGGCTGAACCGCCGGTTCAGACCGTGGTTGCCAAGGATGTTCATGGTGAGCTTTGGAAGTTTAGGCATATTTATAGAGGCACACCTCGGCGCCATTTGCTTACAACTGGTTGGAGCACTTTTGTGAATCAGAAGAAACTAGTTGCTGGTGATTCTGTGGTATTTTTGAGGGCTGAAAATGGGGATCTTTGTATTGGAATCCGTAGGGCAAAGAAGGGAATTGGTGGTAGAGCTGGTTCTGAGGTTTCATCTGGGTGGACCTCAGCTTCTGGACATGGAAATTGTGGTGTTGGACCTTATGGCGCATTCTCTTTTTTCTTAAAAGAGGAGAATAAGTTTCTGAGGAATGGTTGTGGTGGTAATAGTGGTGGTTTGGGTGGAAGAGTAAAGGTGAGGCCTGAAGCTGTTATGGAAGCTATGACATTGGCTTCAAGGAACCAGCCATTTGAGGTTCTTTATTATCCAAGAGCTAGCACTCCTGAGTTCTGCATTAAGGCTTCTGCTGTGAGGGATGCTATGAGAATTCAATGGGACTCTGGAATGAGGTTTAAGATGCCCTTTGAAACCGAGGATTCTTCTAGGATAAGCTGGTTCATGGGAACTATAGCTTCTGTTCAAGTTGTCGATCCTATCAGATGGCCAAATTCCCCATGGCGACTTCTTCAGGTTACTTGGGATGAGCCAGATTTACTACAAAATGTGAAGCGTGTAAGCCCATGGTTGGTTGAATTGGTATCAAACATGCCAGTCATCAATCTCACACCCTTTTCTCCACCAAGGAAGAAGCCGAGGTTTCCACAACACCCTGATTTCCCCCTTGACGTTCCATTTCCGATACCAATGTTTTCAGGCAACCAGCATGGGCATATCAGCCCCTTGTGCGGTTTATCTGATAACGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCACTACGGAATATCTCTTTCAGATATCCACCATAACAATAATAAACTGCAGTTGGGGTTGTTTCCAGCAAATATGCAGCAGCTTAATGTAATTTCAAATGGTAACATGTCGAACCGTGTTAAAAGCAAAGAAAGCTTGTCATGCTTGCTTACCATAGGAAAATCTGATAAGAGTTTGGAGAAACCTAACAATGTTGAGACACACCAGTTTTTGCTTTTTGGTCAACCAATACTCACTGAGCAACAAATCTCTAGAAACTGTTCTAGGGATGTGTTCTCTCATGATTGTGCCGGAAAAAAATCATTAGATGAGATTAAGGACAAGGAAAAGTGCTTTTTTGGTGGCACCAGTCCTGTACTTACACAACAATTTCTACCTGGAAAAGCTTCTACCGAGTTTACTTGGCAACTCGGCTTGGATACCGGTCATTGCAAGGTTTTCTTGGAGTCAGAAGATGTGGGACGGACCTTAGACCTATCAAGTCTCGGTTCTTATGAAGAGTTATACAGGAGACTTTCCAACATGTTTGGTATTCAAAGGTCTGAGATGTTGAACCATGTGCTTTACCGGGATGCAACAGGCGCTGTTAAGAATATTGGAGAAGAACCCTTCAGTGAGTTCATGAAGACAGCAAAAAGATTGACAATTCTGATGGATTCAAGCAGCAAAAATATAAGAGGGGCCTGGATTACAGGAACTCGAAAAGGTGAGCATGGGTTGGATGCATCAAATAAAACTGGTCCACTGAGCATATTTGCATAA 2112 0.4356 MKEVVIEKSLDPQLWHACAGSMIHMPQLNSKVFYFPQGHAEHAQTTLDLTPSLRIPPLILCTLASVKFMADTETDEVFAKMWLVPLRNSNLDERSDGDVIENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVVAKDVHGELWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSVVFLRAENGDLCIGIRRAKKGIGGRAGSEVSSGWTSASGHGNCGVGPYGAFSFFLKEENKFLRNGCGGNSGGLGGRVKVRPEAVMEAMTLASRNQPFEVLYYPRASTPEFCIKASAVRDAMRIQWDSGMRFKMPFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVINLTPFSPPRKKPRFPQHPDFPLDVPFPIPMFSGNQHGHISPLCGLSDNAPAGIQGARHAHYGISLSDIHHNNNKLQLGLFPANMQQLNVISNGNMSNRVKSKESLSCLLTIGKSDKSLEKPNNVETHQFLLFGQPILTEQQISRNCSRDVFSHDCAGKKSLDEIKDKEKCFFGGTSPVLTQQFLPGKASTEFTWQLGLDTGHCKVFLESEDVGRTLDLSSLGSYEELYRRLSNMFGIQRSEMLNHVLYRDATGAVKNIGEEPFSEFMKTAKRLTILMDSSSKNIRGAWITGTRKGEHGLDASNKTGPLSIFA 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0276 703 PANTHER AUXIN RESPONSE FACTOR 7 680 - -
Lal9g0276 703 Gene3D - 317 389 - -
Lal9g0276 703 ProSiteProfiles PB1 domain profile. 591 674 IPR000270 GO:0005515
Lal9g0276 703 Pfam Auxin response factor 279 362 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lal9g0276 703 Gene3D - 107 211 IPR015300 -
Lal9g0276 703 SUPERFAMILY DNA-binding pseudobarrel domain 102 210 IPR015300 -
Lal9g0276 703 CDD B3_DNA 108 209 IPR003340 GO:0003677
Lal9g0276 703 Gene3D - 590 676 - -
Lal9g0276 703 Pfam B3 DNA binding domain 109 210 IPR003340 GO:0003677
Lal9g0276 703 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 680 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lal9g0276 703 ProSiteProfiles B3 DNA-binding domain profile. 109 211 IPR003340 GO:0003677
Lal9g0276 703 SMART B3_2 109 211 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0276 Lal-Chr9 1721226 1725148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0276 7 675 B3 DNA Binding Superfamily AT4G30080 56.769 0.0 723
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lal9g0276 B3 2.9e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0276 - - gmx:100814686 1053.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0276 9 1721226 1725148 Lal9g0276 9 1721226 1725148 ECH
Lal13g1500 13 14608534 14611815 Lal9g0276 9 1721226 1725148 ECH
Lal24g0889 24 7272787 7276678 Lal9g0276 9 1721226 1725148 ECH
Lal10g1230 10 18631524 18635382 Lal9g0276 9 1721226 1725148 PCT
Lal8g0149 8 1013683 1017579 Lal9g0276 9 1721226 1725148 PCT
Lal9g0276 9 1721226 1725148 Lal10g1230 10 18631524 18635382 PCT
Lal9g0276 9 1721226 1725148 Lal8g0149 8 1013683 1017579 PCT