Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0270 ATGACTAAGGATGTTGAGGTTCATCAAGAGCAAGGTGAATACTCTGCTAAGGATTACCAGGACCCACCACCATCACCATTGTTTGATTTAGATGAACTGAGAAAGTGGTCCTTGTACAGAGCCATTATAGCTGAGTTCATAGCAACACTACTCTTCCTTTACATTACCATCTTGACCATTATTGGGTATAATAGCCAGACTGATACCAACAAGGGTGGTACTGAATGTGATGGAGTTGGTGTTTTGGGTATTGCTTGGTCCTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACTGCTGGAATTTCTGGAGGACACATTAACCCAGCTGTGACATTTGGACTATTTGTGGGACGCAAGATATCACTAATAAGGGCATTCTTGTACATAGCAGCACAGAGTGCTGGTGCTATCTGTGGAGCTGGACTAGCCAAGGGGTTCCAAAAATCATACTTTGATAGGTATGGAGGTGGTGCTAACTTTGTTCATTCTGGCTACAACAAAGGTACTGCTTTGGGTGCTGAGATCATTGGTACTTTTGTTCTTGTCTACACTGTCTTTTCTGCCACTGATCCTAAGAGAAATGCTAGAGACTCCCATGTTCCTGTATTGGCACCACTACCAATTGGATTTGCTGTGTTCATGGTTCACTTGGCTACAATCCCAATTACTGGTACTGGAATCAACCCAGCAAGAAGTTTTGGATCTGCTGTCATTTACAACAAGGACAAAATCTGGGATGACCATTGGATTTTCTGGGTTGGACCACTTATTGGAGCATCTGTAGCTGCAGTATACCACCAATACATTCTTAGAGCAGCAGCCATAAAAGCTCTTGGTTCCTTCAGGAGCAACAATTAA 861 0.4309 MTKDVEVHQEQGEYSAKDYQDPPPSPLFDLDELRKWSLYRAIIAEFIATLLFLYITILTIIGYNSQTDTNKGGTECDGVGVLGIAWSFGGMIFILVYCTAGISGGHINPAVTFGLFVGRKISLIRAFLYIAAQSAGAICGAGLAKGFQKSYFDRYGGGANFVHSGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGSAVIYNKDKIWDDHWIFWVGPLIGASVAAVYHQYILRAAAIKALGSFRSNN 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0270 286 PANTHER AQUAPORIN PIP2-7 1 285 - -
Lal9g0270 286 CDD MIP 40 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal9g0270 286 Gene3D Glycerol uptake facilitator protein. 25 286 IPR023271 -
Lal9g0270 286 SUPERFAMILY Aquaporin-like 32 272 IPR023271 -
Lal9g0270 286 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal9g0270 286 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal9g0270 286 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal9g0270 286 PRINTS Major intrinsic protein family signature 174 192 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal9g0270 286 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal9g0270 286 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal9g0270 286 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 285 IPR034294 -
Lal9g0270 286 MobiDBLite consensus disorder prediction 1 15 - -
Lal9g0270 286 TIGRFAM MIP: MIP family channel proteins 44 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal9g0270 286 ProSitePatterns MIP family signature. 106 114 IPR022357 -
Lal9g0270 286 MobiDBLite consensus disorder prediction 1 23 - -
Lal9g0270 286 Pfam Major intrinsic protein 32 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0270 Lal-Chr9 1675756 1677887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0270 1 284 Major Intrinsic Protein MIP AT5G60660 77.113 1.69e-167 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0270 K09872 - gmx:100818032 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0270 9 1675756 1677887 Lal9g0270 9 1675756 1677887 ECH
Lal2g0292 2 1697540 1706404 Lal9g0270 9 1675756 1677887 ECH
Lal20g0093 20 588654 591908 Lal9g0270 9 1675756 1677887 ECH
Lal1g1816 1 20519335 20521969 Lal9g0270 9 1675756 1677887 ECH
Lal1g0379 1 2294033 2296218 Lal9g0270 9 1675756 1677887 LSH
Lal2g0292 2 1697540 1706404 Lal9g0270 9 1675756 1677887 LSH