Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0266 ATGAGTACTGAGGAAAAAAAGCCTGAGACTTTGAGTGAAGAGGTGTTTGATGCTGCAACATTTTCTGTTCCTGTCCAAACGGTTGATGATCCAATGGGGATAACTGAAGAAACCGTGCACGTTCCTCCTCGGAAGCGGCATAATCTTCTCCTAGAAATACCATCAAAAACACAAGAAGAGTGTTCCCAAGATTTTGTTGCAATGAAAGTGCCAATGACACCAAGCCCAACTCCCACTCCCAAGAGAGTGAATTTTCTTGTCACTTCTCGCTCTGTTGATGCTCCAACAAATAATTCTTATGTGCCTCTAACGCCAACGTCAAGAAGCAAATCATCCAGAAGAAGCATTCTACCAAAATTGAGCTTCAGGTATAGAACTCCAACAGATATTGAAAAGGCTACTACTGCAGCTCCAGAAGGTCCCTCTTCAGGCCATGAAGAAAAGCCTTCGATCTCAAGATCATTGTCCCTCTCTAAGATATTTACTCCTAGGATTAAGAGAACATCATCATTACCAGTAGAAGAAATCGGAGATGTAAACATAGAATCTGATCATGGTGGATGTGTTGGTGGTCCTCTAAATAAAAGAGAGGCTCAGCCACAAACAAAGATAGCCCGCTCTCTTTCAGTGCCAGTCAACAGCAAAGAAAAAAGCTTAAGGAGGATGGATTATTTTTTCCGCATTATTCCTTCCACTCCTCGAGGAAAGGAAGGAAATGAATTGGTCACGGCTCCAACAACAGATACTGAAAATGACGATGCTGATGGTGAAGACATAGCTGAGGAAGAGGCTGTGTGTCGAATCTGTCTAGTTGATCTATGTGAAGGAGGTGAGACATTCAAGTTGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCTCATCAGGAATGTGCTATTAAATGGTTTAGTATCAAGGGTAACAAGACCTGTGATGTGTGCAAGGAGGAAGTTCGAAACCTACCTGTTACCCTATTGCGGATCCAAAGTGTTCAAAATCGAAATAGTGGAGCAAGGTCTCTGCATGAAGATGTAAACGGATACAGGGTTTGGCAGGAAGTCCCTGTGCTTGTCATTGTTAGCATGCTGGCCTATTTCTGTTTTCTTGAGCAGTTATTGGTTGGAAAAATGGGAACCGGTGCAATTGCCATTTCTCTTCCATTTTCTTGTGTTCTGGGTCTACTCTCCTCCATGACATCATCGACCATGGTGAAAAGCAGGTTCACCTGGATTTATGCATCTTTCCAGTTTGCTCTGGTGGTTCTCTTTGCACATATATTTTACTCCTTGGTTCATGTGCAAGCAGTTCTGTCAATCCTTCTTGCAACATTTGCTGGTTTTGGTGTGGTGATGAGTGGAAGTTCTATTCTTGTGGAGGCTTTTAGATGGAGAAGGAGATGGCAGTCTCCTCAACTCATGACACAACCACTACAGAATTCTCGACCTATAAACACGCTGCAATCGGGCCCTGATGATGTCACCACTCAAAATGTGGTGCAAGATCAACAGAACTCGACCCAGAGCTGA 1524 0.4357 MSTEEKKPETLSEEVFDAATFSVPVQTVDDPMGITEETVHVPPRKRHNLLLEIPSKTQEECSQDFVAMKVPMTPSPTPTPKRVNFLVTSRSVDAPTNNSYVPLTPTSRSKSSRRSILPKLSFRYRTPTDIEKATTAAPEGPSSGHEEKPSISRSLSLSKIFTPRIKRTSSLPVEEIGDVNIESDHGGCVGGPLNKREAQPQTKIARSLSVPVNSKEKSLRRMDYFFRIIPSTPRGKEGNELVTAPTTDTENDDADGEDIAEEEAVCRICLVDLCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLLRIQSVQNRNSGARSLHEDVNGYRVWQEVPVLVIVSMLAYFCFLEQLLVGKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFTWIYASFQFALVVLFAHIFYSLVHVQAVLSILLATFAGFGVVMSGSSILVEAFRWRRRWQSPQLMTQPLQNSRPINTLQSGPDDVTTQNVVQDQQNSTQS 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0266 507 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 321 IPR013083 -
Lal9g0266 507 ProSiteProfiles Zinc finger RING-CH-type profile. 258 320 IPR011016 GO:0008270
Lal9g0266 507 CDD RING_CH-C4HC3_MARCH 266 314 - -
Lal9g0266 507 SMART ringv_2 265 314 IPR011016 GO:0008270
Lal9g0266 507 MobiDBLite consensus disorder prediction 236 256 - -
Lal9g0266 507 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 31 483 - -
Lal9g0266 507 MobiDBLite consensus disorder prediction 486 507 - -
Lal9g0266 507 Pfam RING-variant domain 266 313 IPR011016 GO:0008270
Lal9g0266 507 MobiDBLite consensus disorder prediction 127 155 - -
Lal9g0266 507 MobiDBLite consensus disorder prediction 94 114 - -
Lal9g0266 507 PANTHER OS02G0165000 PROTEIN 31 483 - -
Lal9g0266 507 SUPERFAMILY RING/U-box 262 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0266 Lal-Chr9 1651625 1664386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0266 208 320 C3H Transcription Factor Family AT2G37950 33.333 1.74e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0266 - - gmx:100788108 710.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0266 9 1651625 1664386 Lal9g0266 9 1651625 1664386 ECH
Lal2g0287 2 1669510 1674627 Lal9g0266 9 1651625 1664386 LSH
Lal25g0180 25 1162863 1167362 Lal9g0266 9 1651625 1664386 PCT
Lal9g0266 9 1651625 1664386 Lal25g0180 25 1162863 1167362 PCT