Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0264 ATGTTCAAGATCCAAACTCAAACCCTAATCCTACTCTTAGTTCAAACCCATCCAAGAAAAAGAGAAACCTACCTGGAAACCCAGGCAAATCCAAATTCTGAGGTAATAACTCTTTCCCCGAAGTCTCTGATGGCGACGAACCGATTCATCTGTGAAATCTGCAATAAGGGTTTCCCGAGAGAACAAAACTTGCAGCTTCATCGGCGAGGGCATAAACTACCATGGAAGCTGAAGCAGAGAGCAAAGAATGATGAAGTGAGGAAGAAGGTGTATGTGTGCCCAGAGAAGAGTTGTGTACACCATGACCCTTGTAGAGCACTAGGAGACTTAACAGGTATAAAGAAACACTATAGCAGAAAGCATGGGGAGAAGAAGTGGAAGTGTGAAAAGTGTTCTAGAAAATATGCAGTTCTATCAGATTGGAAGGCCCATAACAAGATTTGTGGAACTAGAGAGTACAAATGTGACTGTGGCACACTTTTCTCCAGGAAGGACAGTTTCATAACACACAGAGCCTTTTGTGATGCATTGACTGAAGAAAGTGTGAGAGTTCCTGGAGCTTTAAGTAACTTGAGAAGGGATATTCATTTGCCCAATAATAATACTACTCAACTACCCAGAATCCCTCAGATTTTTCCAAGATCTCATTCAGGATTTGGTGGTAATTCAGTTTCAGAACCATTGGAGATTAATTACACCAACAACTCTCAGCTTCATTACTGCATCCCAAGAAAATTGAGTGCGTTCTCATCCAATGCAAACTCTGTTGCCTGCACCAACATGCCTGATTTAGTGGAAACAATGAACATGTTTGGGTCACCACCTCAACAAGAAACACAGTGGCTGAATTACCGAGCATCATTCACAAGTGCTAATAAAAACAATGTACCTATGTCATTGCCTGCACAACTGCCACATGGCCTGAAGCAAAAACAAGAAGAAAACAAACAGGACTTGTCTTATATTACTGCAAACTCCGTGTACTTCGATAATCAGAATTCACAGGGTGGAGGAGGAGGCCCAACTCACATGTCAGCAGAAACATCACTGTTACATAAAGATAATATTGCATCCTCCACCTTCGACAACAACAACCATAATGTCTTTGGCTTGATCGGTTTTTCAAGGAAGGTGAATAATAATAACATTGTTGAGGTTCAGAAGTTTTTCAAAGAAGGAAACTTGAATCATGATCAGTTGGTGAATTTAGAATGTGGTAGCACCAACCTTGGAGCTAGTGGGTTTTCATTGAATTACTCAAGCTCAGATAATAACAAAGACCAGTTTGGTTTAACAAGAGACTTTCTGGGTGTTGGAGATGAGTCAATTACAATAAGCAGACCCTTTGATCTCACTGAGTTTAATGCAATAGGATCAGTCATGGACCTGCATAGCAGACAGTATGATGAACATTACTGCTAG 1422 0.4086 MFKIQTQTLILLLVQTHPRKRETYLETQANPNSEVITLSPKSLMATNRFICEICNKGFPREQNLQLHRRGHKLPWKLKQRAKNDEVRKKVYVCPEKSCVHHDPCRALGDLTGIKKHYSRKHGEKKWKCEKCSRKYAVLSDWKAHNKICGTREYKCDCGTLFSRKDSFITHRAFCDALTEESVRVPGALSNLRRDIHLPNNNTTQLPRIPQIFPRSHSGFGGNSVSEPLEINYTNNSQLHYCIPRKLSAFSSNANSVACTNMPDLVETMNMFGSPPQQETQWLNYRASFTSANKNNVPMSLPAQLPHGLKQKQEENKQDLSYITANSVYFDNQNSQGGGGGPTHMSAETSLLHKDNIASSTFDNNNHNVFGLIGFSRKVNNNNIVEVQKFFKEGNLNHDQLVNLECGSTNLGASGFSLNYSSSDNNKDQFGLTRDFLGVGDESITISRPFDLTEFNAIGSVMDLHSRQYDEHYC 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0264 473 ProSitePatterns Zinc finger C2H2 type domain signature. 51 71 IPR013087 -
Lal9g0264 473 SMART c2h2final6 49 71 IPR013087 -
Lal9g0264 473 SMART c2h2final6 91 121 IPR013087 -
Lal9g0264 473 SMART c2h2final6 126 146 IPR013087 -
Lal9g0264 473 Pfam Zinc-finger double-stranded RNA-binding 49 72 IPR022755 -
Lal9g0264 473 SUPERFAMILY beta-beta-alpha zinc fingers 48 146 IPR036236 -
Lal9g0264 473 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 17 443 - -
Lal9g0264 473 Gene3D Classic Zinc Finger 83 174 - -
Lal9g0264 473 PANTHER PROTEIN INDETERMINATE-DOMAIN 13-RELATED 17 443 - -
Lal9g0264 473 ProSiteProfiles Zinc finger C2H2 type domain profile. 49 71 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0264 Lal-Chr9 1641314 1643146 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0264 20 204 IDZ Gene Family AT3G45260 71.579 5.00e-97 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal9g0264 zf-C2H2_jaz 6.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0264 K25870 - gmx:100781896 436.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0264 9 1641314 1643146 Lal9g0264 9 1641314 1643146 ECH
Lal1g0374 1 2265403 2267176 Lal9g0264 9 1641314 1643146 LSH
Lal10g1237 10 18674067 18676146 Lal9g0264 9 1641314 1643146 PCT
Lal8g0137 8 941929 944189 Lal9g0264 9 1641314 1643146 PCT
Lal9g0264 9 1641314 1643146 Lal10g1237 10 18674067 18676146 PCT
Lal9g0264 9 1641314 1643146 Lal8g0137 8 941929 944189 PCT