Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0262 ATGAGTGGTTCAAGAATGAAGATTGCAGGAAGATTCAAACCTTGTGTTCACATGGGTTGTTTTGATCTCGAAGTTTTTGTGGAAATGAATCAACGGTCAAGAAAGTGGCAATGTCCCATATGTCTTAAAAACTACGCTTTGGAGAATATCATCATTGACCCTTATTTTAATCGTATCACTTCCAAGACGATACATTGTGGTGAAGAGGTTACAGAGGTTGAGGTGAAGCCTGATGGTTCTTGGCGTGTGAAGGCAAAGAGTGAAAGTGAACGCATAGGATTAGGAAATCTTGCACAATGGCACTCTCCTGATGGATCTGTCTGTATTTCCAATGATGGAGAAGTCAAAAGATTGGAAACATTGAAGCAGGTCAAACAGGAAGCTTCAGATACTCCTACTGGTTTAAAAATTGGCATAAGGAAGAATACCAATGGAGTTTGGGAGGTCAGCAAACCTGAGGACACAAACACATCTTCTGGTAATATATTGAAAGAGGTCTTTGGAAATCATGAACAGGTGGTTATTCCAATGAGTAGCAGTGGCACTGGAAGTGGTCGGGATGGTGATGATCCTAGCGTAAATCAGGGTGGTAGTGGACATCTTGATTGTTCTACTACCAATGGGGTTGAGTTGGATTCTCTGTATCTCAAAAATGGTGCTTCAGCATATGGATATACTGCACATGATACTTCTGCTCAAGCGGGTGGTACTGAAGTTATTATTCTGAGTGATTCGGATGAAGACAATGACATATTGATATCTCCTGCAGTTGCGTATATGAACAACCAAACTGGTGCTGCAGGAGATGTTTACTCAGTTCCACCACCTGGAATTGTTGATTCTTACATTGAAGATCACAGTCTTGGTGGAAATTCATGCTTGGGACTTTTTCCTAATGAAGATGATTTTGGGATGCATTCCTCCCTGTGGTCATTGCCATCCGGAACTCAGGCTGGTCCAGGATTCCAATTATTTGGTTCTGATGCAGGTGTATCAGATGCTTTGGTCCATTTGCAGCATGGTTCTATTAATTGCTCCTCATCACTGAATGGTTATTCATTGGCTCCTGATACCTTGGGATCTATTAATATACCAGATTCCTCTACTGCTCCTGATTTAAATGGTGGTTTGGTTGACAATCCACTGGCTTTTGCTGGAGATGATCCCTCACTCCAGATTTTTCTCCCCACAAGACCAGCTGAATCGTCAGTTCAGCATGAATCAAGAGATCAGGCAAATATGTCAAATGGTGTCTGCACTGAGGATTGGATATCTCTTAGTCTTGGAGGCAGTGCCGGTGGTAGTATTGGCAATGCTTCCACTCAAAATGGGTTTAATTCTGGAATCCAATTGCCAACTACAGAAGCTGCCACAAATAATTTGGCTGATACTGGTTTGTTGCTTTCTAACTGTAAGTGA 1419 0.42 MSGSRMKIAGRFKPCVHMGCFDLEVFVEMNQRSRKWQCPICLKNYALENIIIDPYFNRITSKTIHCGEEVTEVEVKPDGSWRVKAKSESERIGLGNLAQWHSPDGSVCISNDGEVKRLETLKQVKQEASDTPTGLKIGIRKNTNGVWEVSKPEDTNTSSGNILKEVFGNHEQVVIPMSSSGTGSGRDGDDPSVNQGGSGHLDCSTTNGVELDSLYLKNGASAYGYTAHDTSAQAGGTEVIILSDSDEDNDILISPAVAYMNNQTGAAGDVYSVPPPGIVDSYIEDHSLGGNSCLGLFPNEDDFGMHSSLWSLPSGTQAGPGFQLFGSDAGVSDALVHLQHGSINCSSSLNGYSLAPDTLGSINIPDSSTAPDLNGGLVDNPLAFAGDDPSLQIFLPTRPAESSVQHESRDQANMSNGVCTEDWISLSLGGSAGGSIGNASTQNGFNSGIQLPTTEAATNNLADTGLLLSNCK 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0262 472 PANTHER E3 SUMO-PROTEIN LIGASE SIZ1 1 441 - -
Lal9g0262 472 ProSiteProfiles Zinc finger SP-RING-type profile. 1 65 IPR004181 GO:0008270
Lal9g0262 472 Pfam MIZ/SP-RING zinc finger 1 43 IPR004181 GO:0008270
Lal9g0262 472 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 1 441 - -
Lal9g0262 472 MobiDBLite consensus disorder prediction 175 201 - -
Lal9g0262 472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0262 Lal-Chr9 1627218 1637963 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0262 - - aprc:113857557 732.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0262 9 1627218 1637963 Lal9g0262 9 1627218 1637963 ECH
Lal2g0276 2 1613442 1621469 Lal9g0262 9 1627218 1637963 LSH
Lal25g0171 25 1092482 1108581 Lal9g0262 9 1627218 1637963 PCT
Lal10g1239 10 18686169 18696195 Lal9g0262 9 1627218 1637963 PCT
Lal9g0262 9 1627218 1637963 Lal25g0171 25 1092482 1108581 PCT
Lal9g0262 9 1627218 1637963 Lal10g1239 10 18686169 18696195 PCT