LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal9g0249	ATGTTCGATCTCAATCTAAATTCGGACTTGGCCGATTCAACTAAGAATCGCAACTCAGTGCCATTGATGGAAAAGTTTCTAGAAGGTTCCTGGAACAAAATGGCGGAATCAGCGACCTCGAATTCCTCCGTGGTCAATGCGGACGGGTCCAGCAACGACGACTCGTACTCCACACGCGCCGAAGAAGCCTTCACCTTCGATTTCGGTATCCTTAAGGCAGAAGGAAGAAACGACGTCGTAACTATGGAGCTCTTTCCTGTTAATGAAGTGGCAGGTGTTTTATTCGGGAACTGGAATCATACGTCGTCGTTTGATCGCCAGAGCGAGACGAAGGTGGTTACAGTTGAGCAACAACCTCAACCGCTGCAAGTGAAAAAGAGCAGAAGGGGACCAAGGTCGCGGAGCTCGCAGTATAGAGGAGTCACCTTCTATAGAAGAACCGGAAGATGGGAATCACATATCTGGGATTGCGGGAAGCAACATATTCTGATGGAATTGGTATTGGGGCCTTTAGGTGGGTTTGACACTGCTCATGCAGCTGCTAGGGCCTATGATCGAGCTGCTGTTAAGTTCCGAGGAATTCGTGCAGACATCAATTTCAATCTGAGTGATTATGAGGATGATGTTAAACAGATGAAGAATCTATCCAAAGAGGAATTTATTCATATATTGCGTCGTCAAAGCACTGGTTTCTCAAGGGGGAGTTCAAAATACCGAGGAGTGACACTCCACAAATGTGGACGTTGGGAGGCTCGAATGGGACAATTCCTGGGCAAAAAGTATATATATCTTGGGCTATTCAACAGTGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCTATCAAATGCAATGGAAGGGAAGCAGTGACTAACTTTGAGCCAAGTATATATGAAGGGGAGATGAAGTCTGCAGCTAATAACGAAGGTAACAGTCACAATCTTGACCTCAATTTGGGCATGGCGACTCCAGGACACCATGTCAAAGAAAAGAGGATGGAAACAAATTTTAATTCAGTAATTGGTAATTCATCTTCGAAAAGGCTGGTTGTAACTGAAAAACACTCTTCTGTATGGAATGGCATGAATCTTAGTTTCTTTTCCAATGAGGAAAGTCCAGGGAAAGTCAGTATAGATCCTTCAAAAGGACTCCGTAACTGGGCCTGGCAAATGCATGGCCAGGTCACTGCTACCGTAGTCCCACCGTTCTCTGCCGCAGCATCATCAGGATTCTCATTTTCAACTCCGCTTCCATCGAGTTCTATCTTTCCAAAAAATTATGTGTACTCAATTCCACAGAGTCTCTGTTTTTCGTCATCCAGCACACCTAGTAGCAATGCGTCTCAATATTGCCAGGTTAAGTCACCACAAGCACCACCGTAA	1383	0.4534	MFDLNLNSDLADSTKNRNSVPLMEKFLEGSWNKMAESATSNSSVVNADGSSNDDSYSTRAEEAFTFDFGILKAEGRNDVVTMELFPVNEVAGVLFGNWNHTSSFDRQSETKVVTVEQQPQPLQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQHILMELVLGPLGGFDTAHAAARAYDRAAVKFRGIRADINFNLSDYEDDVKQMKNLSKEEFIHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFNSEVEAARAYDKAAIKCNGREAVTNFEPSIYEGEMKSAANNEGNSHNLDLNLGMATPGHHVKEKRMETNFNSVIGNSSSKRLVVTEKHSSVWNGMNLSFFSNEESPGKVSIDPSKGLRNWAWQMHGQVTATVVPPFSAAASSGFSFSTPLPSSSIFPKNYVYSIPQSLCFSSSSTPSSNASQYCQVKSPQAPP	460

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lal9g0249	460	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	1	422	-	-
Lal9g0249	460	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7	1	422	-	-
Lal9g0249	460	Pfam	AP2 domain	236	286	IPR001471	GO:0003700\|GO:0006355
Lal9g0249	460	PRINTS	Ethylene responsive element binding protein signature	238	249	IPR001471	GO:0003700\|GO:0006355
Lal9g0249	460	PRINTS	Ethylene responsive element binding protein signature	276	296	IPR001471	GO:0003700\|GO:0006355
Lal9g0249	460	ProSiteProfiles	AP2/ERF domain profile.	137	201	IPR001471	GO:0003700\|GO:0006355
Lal9g0249	460	Gene3D	AP2/ERF domain	136	202	IPR036955	GO:0003700\|GO:0006355
Lal9g0249	460	Gene3D	AP2/ERF domain	236	295	IPR036955	GO:0003700\|GO:0006355
Lal9g0249	460	CDD	AP2	236	296	IPR001471	GO:0003700\|GO:0006355
Lal9g0249	460	SMART	rav1_2	237	300	IPR001471	GO:0003700\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal9g0249	Lal-Chr9	1543291	1547233	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal9g0249	85	336	AP2-EREBP Transcription Factor Family	AT4G36920	66.409	7.79e-94	288

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-AP2	Lal9g0249		AP2	1.1e-08	CL0081

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal9g0249	K09284		-	gmx:100777102	530.791

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Lal9g0249	9	1543291	1547233	Lal9g0249	9	1543291	1547233	ECH
Lal25g0165	25	1061545	1065365	Lal9g0249	9	1543291	1547233	PCT
Lal8g0127	8	873613	878098	Lal9g0249	9	1543291	1547233	PCT
Lal9g0249	9	1543291	1547233	Lal25g0165	25	1061545	1065365	PCT
Lal9g0249	9	1543291	1547233	Lal8g0127	8	873613	878098	PCT

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