Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0249 ATGTTCGATCTCAATCTAAATTCGGACTTGGCCGATTCAACTAAGAATCGCAACTCAGTGCCATTGATGGAAAAGTTTCTAGAAGGTTCCTGGAACAAAATGGCGGAATCAGCGACCTCGAATTCCTCCGTGGTCAATGCGGACGGGTCCAGCAACGACGACTCGTACTCCACACGCGCCGAAGAAGCCTTCACCTTCGATTTCGGTATCCTTAAGGCAGAAGGAAGAAACGACGTCGTAACTATGGAGCTCTTTCCTGTTAATGAAGTGGCAGGTGTTTTATTCGGGAACTGGAATCATACGTCGTCGTTTGATCGCCAGAGCGAGACGAAGGTGGTTACAGTTGAGCAACAACCTCAACCGCTGCAAGTGAAAAAGAGCAGAAGGGGACCAAGGTCGCGGAGCTCGCAGTATAGAGGAGTCACCTTCTATAGAAGAACCGGAAGATGGGAATCACATATCTGGGATTGCGGGAAGCAACATATTCTGATGGAATTGGTATTGGGGCCTTTAGGTGGGTTTGACACTGCTCATGCAGCTGCTAGGGCCTATGATCGAGCTGCTGTTAAGTTCCGAGGAATTCGTGCAGACATCAATTTCAATCTGAGTGATTATGAGGATGATGTTAAACAGATGAAGAATCTATCCAAAGAGGAATTTATTCATATATTGCGTCGTCAAAGCACTGGTTTCTCAAGGGGGAGTTCAAAATACCGAGGAGTGACACTCCACAAATGTGGACGTTGGGAGGCTCGAATGGGACAATTCCTGGGCAAAAAGTATATATATCTTGGGCTATTCAACAGTGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCTATCAAATGCAATGGAAGGGAAGCAGTGACTAACTTTGAGCCAAGTATATATGAAGGGGAGATGAAGTCTGCAGCTAATAACGAAGGTAACAGTCACAATCTTGACCTCAATTTGGGCATGGCGACTCCAGGACACCATGTCAAAGAAAAGAGGATGGAAACAAATTTTAATTCAGTAATTGGTAATTCATCTTCGAAAAGGCTGGTTGTAACTGAAAAACACTCTTCTGTATGGAATGGCATGAATCTTAGTTTCTTTTCCAATGAGGAAAGTCCAGGGAAAGTCAGTATAGATCCTTCAAAAGGACTCCGTAACTGGGCCTGGCAAATGCATGGCCAGGTCACTGCTACCGTAGTCCCACCGTTCTCTGCCGCAGCATCATCAGGATTCTCATTTTCAACTCCGCTTCCATCGAGTTCTATCTTTCCAAAAAATTATGTGTACTCAATTCCACAGAGTCTCTGTTTTTCGTCATCCAGCACACCTAGTAGCAATGCGTCTCAATATTGCCAGGTTAAGTCACCACAAGCACCACCGTAA 1383 0.4534 MFDLNLNSDLADSTKNRNSVPLMEKFLEGSWNKMAESATSNSSVVNADGSSNDDSYSTRAEEAFTFDFGILKAEGRNDVVTMELFPVNEVAGVLFGNWNHTSSFDRQSETKVVTVEQQPQPLQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQHILMELVLGPLGGFDTAHAAARAYDRAAVKFRGIRADINFNLSDYEDDVKQMKNLSKEEFIHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFNSEVEAARAYDKAAIKCNGREAVTNFEPSIYEGEMKSAANNEGNSHNLDLNLGMATPGHHVKEKRMETNFNSVIGNSSSKRLVVTEKHSSVWNGMNLSFFSNEESPGKVSIDPSKGLRNWAWQMHGQVTATVVPPFSAAASSGFSFSTPLPSSSIFPKNYVYSIPQSLCFSSSSTPSSNASQYCQVKSPQAPP 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0249 460 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 422 - -
Lal9g0249 460 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 422 - -
Lal9g0249 460 Pfam AP2 domain 236 286 IPR001471 GO:0003700|GO:0006355
Lal9g0249 460 PRINTS Ethylene responsive element binding protein signature 238 249 IPR001471 GO:0003700|GO:0006355
Lal9g0249 460 PRINTS Ethylene responsive element binding protein signature 276 296 IPR001471 GO:0003700|GO:0006355
Lal9g0249 460 ProSiteProfiles AP2/ERF domain profile. 137 201 IPR001471 GO:0003700|GO:0006355
Lal9g0249 460 Gene3D AP2/ERF domain 136 202 IPR036955 GO:0003700|GO:0006355
Lal9g0249 460 Gene3D AP2/ERF domain 236 295 IPR036955 GO:0003700|GO:0006355
Lal9g0249 460 CDD AP2 236 296 IPR001471 GO:0003700|GO:0006355
Lal9g0249 460 SMART rav1_2 237 300 IPR001471 GO:0003700|GO:0006355
Lal9g0249 460 SMART rav1_2 137 207 IPR001471 GO:0003700|GO:0006355
Lal9g0249 460 MobiDBLite consensus disorder prediction 441 460 - -
Lal9g0249 460 ProSiteProfiles AP2/ERF domain profile. 237 294 IPR001471 GO:0003700|GO:0006355
Lal9g0249 460 SUPERFAMILY DNA-binding domain 136 202 IPR016177 GO:0003677
Lal9g0249 460 MobiDBLite consensus disorder prediction 114 138 - -
Lal9g0249 460 SUPERFAMILY DNA-binding domain 236 296 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0249 Lal-Chr9 1543291 1547233 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0249 85 336 AP2-EREBP Transcription Factor Family AT4G36920 66.409 7.79e-94 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lal9g0249 AP2 1.1e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0249 K09284 - gmx:100777102 530.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0249 9 1543291 1547233 Lal9g0249 9 1543291 1547233 ECH
Lal25g0165 25 1061545 1065365 Lal9g0249 9 1543291 1547233 PCT
Lal8g0127 8 873613 878098 Lal9g0249 9 1543291 1547233 PCT
Lal9g0249 9 1543291 1547233 Lal25g0165 25 1061545 1065365 PCT
Lal9g0249 9 1543291 1547233 Lal8g0127 8 873613 878098 PCT