Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0247 ATGAATTGCTTTGGTTGCAAAAGGAAATCAACCAAAAATTCACACAAGAACAAAGACGATAGCCACACCCATAAGTCCACCAATCACACTTCCCTTGATAAGGTCAAAGTTGATTTAAAACTGAATGAGAAAAGAGATGAGTCCAAGGGTGATCAACTAGCTCTGGATTTGAATAGTTTAAATTTGAAAGAGGCGATTTCCGAAGATGGAAATGATAATGGTATCCGGGCGCAGGCATTCAGCTTTGATGAACTTGCAGCTGCAACAGAAAATTTCAGGTCAGATTGCTTGTTGGGTGAAGGAGGCTTTGGAAAGGTTTACAAGGGGCAATTGAAAAAAATAAATCAGGTTGTAGCTATAAAGCAACTTGACCCTTATGGAGTTCAAGGAATTCGGGAATTTGTTGTTGAAGTGTTGACACTGAGTTTAGCAGATCATCCTAATCTTGTCAAGTTGATTGGATTTTGTGCTGAGGGAGAGCAGAGGCTATTGGTTTATGAGTACATGCCATTGGGATCTTTGGAGAACCATTTGCTCGATCTTCCGCCCGGTAGAAAACCACTTGACTGGAATACGAGGATGAAAATAGCAGCAGGTGCAGCCAGTGGTTTGGAGTATTTGCATGATAAAATGAAGATTCCTGTCATATACCGTGACTTGAAATGCTCTAACATTTTGTTAGGCGAGGGATATCATCCCAAGTTATCTGATTTTGGTTTGGCAAAAGTCGGCCCAATTGGTGATAAGACCCATGTTTCAACAAGGATTATGGGTACATATGGATATTGTGCTCCAGATTATGCAATGACAGGTCAATTAACACTCAAGTCAGATATTTACAGCCTCGGTGTTGTTCTTTTGGAGCTCATCACAGGCAGGAAAGCCATTGACCCTACAAAACCTCGCAAAGAACAAAACTTGGTTGCATGGGTATGTCACTCTTTACCTATCATTTTATTGTTTAATGTGGAATCATGCTTGTTGATTTACTTTAGTAGAAAATGTTCTTATCAAATTGGCCGTGGCTGGGAAATTAAGTTGCAAGTTCAATTACTTGTTAATCTTTGGTGCTACTTTCGGTCAAGCTTGGATTAG 1095 0.4 MNCFGCKRKSTKNSHKNKDDSHTHKSTNHTSLDKVKVDLKLNEKRDESKGDQLALDLNSLNLKEAISEDGNDNGIRAQAFSFDELAAATENFRSDCLLGEGGFGKVYKGQLKKINQVVAIKQLDPYGVQGIREFVVEVLTLSLADHPNLVKLIGFCAEGEQRLLVYEYMPLGSLENHLLDLPPGRKPLDWNTRMKIAAGAASGLEYLHDKMKIPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPIGDKTHVSTRIMGTYGYCAPDYAMTGQLTLKSDIYSLGVVLLELITGRKAIDPTKPRKEQNLVAWVCHSLPIILLFNVESCLLIYFSRKCSYQIGRGWEIKLQVQLLVNLWCYFRSSLD 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0247 364 MobiDBLite consensus disorder prediction 1 30 - -
Lal9g0247 364 PANTHER OS07G0668900 PROTEIN 1 311 - -
Lal9g0247 364 MobiDBLite consensus disorder prediction 13 30 - -
Lal9g0247 364 Pfam Protein kinase domain 96 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal9g0247 364 ProSiteProfiles Protein kinase domain profile. 92 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal9g0247 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Lal9g0247 364 SMART serkin_6 92 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal9g0247 364 SUPERFAMILY Protein kinase-like (PK-like) 78 314 IPR011009 -
Lal9g0247 364 ProSitePatterns Protein kinases ATP-binding region signature. 98 121 IPR017441 GO:0005524
Lal9g0247 364 Gene3D Transferase(Phosphotransferase) domain 1 169 330 - -
Lal9g0247 364 Gene3D Phosphorylase Kinase; domain 1 63 168 - -
Lal9g0247 364 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL5-RELATED 1 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0247 Lal-Chr9 1533217 1536834 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0247 1 311 Glycoside Hydrolase AT3G07070 57.233 7.06e-122 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lal9g0247 Pkinase 3.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0247 - - gmx:100811821 500.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0162 25 1035733 1039466 Lal9g0247 9 1533217 1536834 PCT
Lal10g1247 10 18730549 18739542 Lal9g0247 9 1533217 1536834 PCT
Lal9g0247 9 1533217 1536834 Lal25g0162 25 1035733 1039466 PCT
Lal9g0247 9 1533217 1536834 Lal10g1247 10 18730549 18739542 PCT