LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal9g0241	ATGTTGGAAATTCCACCGATGCATTCACCCTACGGGTCTTTACTCAACCTGGGCTTGGGCTATATCTCGAATCTTAATGAACAGGCCCGGTCCATTTATGAACCGGACGCAAAGTGTGGTTATTTTTCGTATACATATATATATTGTGGTCACACCCGAAACCCTAACTTCACCTTGTTCTTCTCTTCAGACTGCAGCTATCTCTCCTTTTCCTTACGCATCACTATGGCTCCCGCTAAAGTTGATAGTTCTAAGAAGGGTGATCCAAAGGCACAGGCTTTGAAAACTGCGAAAGCAGTGAAATCAGGCCCAACTTTCAAGAAGAAGGCAAAGAAAATCCGAACTAAGGTTACATTCCATAGGCCAAAGACATTAACTAAGGATAGGAACCCAAAATATCCTCGCATTAGTGCTCCACCTAGGAACAAGCTTGATCATTATCAGATCCTGAAATTCCCTCTCACTACCGAGTCTGCTATGAAGAAGATTGAAGACAACAACACCTTGGTCTTCATTGTTGACCTGCGTGCCGACAAGAAGAAGATTAAGGATGCAGTTAAGAAAATGTATGACATCCAGGCCAAGAAGGTCAACACCTTGATCAGGCCTGATGGCACGAAGAAGGCCTATGTGAGGTTGACTCCTGATTATGATGCCTTGGATGTAGCAAACAAGATTGGCATTATCTAA	690	0.4348	MLEIPPMHSPYGSLLNLGLGYISNLNEQARSIYEPDAKCGYFSYTYIYCGHTRNPNFTLFFSSDCSYLSFSLRITMAPAKVDSSKKGDPKAQALKTAKAVKSGPTFKKKAKKIRTKVTFHRPKTLTKDRNPKYPRISAPPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII	229

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal9g0241	229	Pfam	Ribosomal protein L23, N-terminal domain	90	139	IPR005633	-
	Lal9g0241	229	Pfam	Ribosomal protein L23	149	211	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Lal9g0241	229	PANTHER	60S RIBOSOMAL PROTEIN L23A-2	76	229	-	-
	Lal9g0241	229	TIGRFAM	uL23_arch: ribosomal protein uL23	153	229	IPR019985	GO:0003735\|GO:0005840\|GO:0006412
	Lal9g0241	229	SUPERFAMILY	Ribosomal proteins S24e, L23 and L15e	146	222	IPR012678	GO:0003735\|GO:0005840\|GO:0006412
	Lal9g0241	229	Gene3D	-	110	229	IPR012677	-
	Lal9g0241	229	Hamap	50S ribosomal protein L23 [rplW].	149	229	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Lal9g0241	229	ProSitePatterns	Ribosomal protein L23 signature.	207	222	IPR001014	-
	Lal9g0241	229	PANTHER	60S RIBOSOMAL PROTEIN L23A	76	229	IPR013025	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal9g0241	Lal-Chr9	1476655	1478918	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal9g0241	76	229	Cytoplasmic Ribosomal Protein Gene Family	AT2G39460	88.961	6.83e-70	209

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal9g0241	K02893		-	jre:109021970	286.96