Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0235 ATGACTACTGGGAAAGGGATTGAAATAACGAATGAGATGGTTTGGAAGTGGGTTTCAATCAAAACAGCTATGCGAATAACCAATCCAATAGCCAATAACACTCTTCTTCTTTTCCAGATTTCTCCCTTAGCTCGATTTCTATGCACGCGCCATTCATCTTCCAAATTGTTCGTCGCAGGGCTTTCATACGATACGAATGAAACGGTTCTAAGAGATGCCTTTGGGCAGCATGGTGAAATCATTGAAGCTAAGGTAATTTGTGATCATGTAACTGGAAAATCAAAAGGGTATGGATTTGTGCGCTTCACTTCTGAAACTGAAGCTGTCACATCTCGCAAACAAATGCACGGCCAGATGCTGGATGGAAGACGCATTCGTGTGAGTTATGCGCACAAAGCATAA 402 0.4229 MTTGKGIEITNEMVWKWVSIKTAMRITNPIANNTLLLFQISPLARFLCTRHSSSKLFVAGLSYDTNETVLRDAFGQHGEIIEAKVICDHVTGKSKGYGFVRFTSETEAVTSRKQMHGQMLDGRRIRVSYAHKA 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0235 133 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 56 126 IPR000504 GO:0003723
Lal9g0235 133 Gene3D - 45 133 IPR012677 -
Lal9g0235 133 PANTHER GLYCINE-RICH RNA-BINDING-LIKE PROTEIN-RELATED 32 132 - -
Lal9g0235 133 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 32 132 - -
Lal9g0235 133 SMART rrm1_1 55 128 IPR000504 GO:0003723
Lal9g0235 133 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 132 IPR000504 GO:0003723
Lal9g0235 133 SUPERFAMILY RNA-binding domain, RBD 51 131 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0235 Lal-Chr9 1456707 1457734 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0235 54 132 Eukaryotic Initiation Factors Gene Family AT3G16380 43.038 2.18e-15 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0235 K13195 - gmx:100306540 161.77