Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0224 ATGTTTAGGGAAAGAAAAACAAAAGAAATGGGTATGGCCAATGTTTTTCTCTGCATTGCCTCCATTATGTTCTCATTAATGTGGATCCATGTTGAAGCACGAATTCCAGGTGTTTACTCTGGTGGTTCTTGGCAAAGTGCTCATGCTACTTTTTATGGTGGTTCTGATGCTTCTGGCACCATGGGAGGGGCGTGTGGGTATGGGAATCTGTACAGCCAAGGGTATGGAGTGAGCACAGCAGCATTGAGCACAGCACTATTCAACAATGGTCTAAGCTGTGGTGCATGTTTTGAGATCAAGTGTGCAAATGATAGGGAATGGTGTCACTCTGGAAGCCCTTCCATCTTTATTACCGCAACTAACTTTTGTCCTCCAAACTTTGCTCTTCCAAACGACAATGGTGGATGGTGCAACCCTCCACGACCACACTTTGACCTAGCCATGCCCATGTTCCTCAAGATTGCCGAGTACCGTGCCGGAATCGTTCCAGTTGCTTATCGCCGGGTGGCATGCAGAAAGAATGGAGGGATCAGATTCACCGTTAACGGCTTCCGTTACTTCAACCTGGTTTTAATCACCAACGTTGCTGGTGCAGGTGATATCACACGCGCCTACGTGAAGGGCACGCGAACCGGTTGGATGACACTGAGCCGAAACTGGGGTCAGAATTGGCAATCAAATGCGGTATTAGTGGGCCAACCCTTGTCTTTTCGTGTCACTGGAAGTGATCGCCGCACCTCTACCTCTTGGAACATTGCACCCTCTAATTGGCAATTTGGTCAAACTTTCACTGGAAAAAATTTCAGGATCTAA 813 0.4748 MFRERKTKEMGMANVFLCIASIMFSLMWIHVEARIPGVYSGGSWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVSTAALSTALFNNGLSCGACFEIKCANDREWCHSGSPSIFITATNFCPPNFALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVACRKNGGIRFTVNGFRYFNLVLITNVAGAGDITRAYVKGTRTGWMTLSRNWGQNWQSNAVLVGQPLSFRVTGSDRRTSTSWNIAPSNWQFGQTFTGKNFRI 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0224 270 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 186 265 IPR007117 -
Lal9g0224 270 SUPERFAMILY PHL pollen allergen 173 265 IPR036749 -
Lal9g0224 270 PRINTS Expansin signature 74 88 IPR002963 GO:0009664
Lal9g0224 270 PRINTS Expansin signature 101 112 IPR002963 GO:0009664
Lal9g0224 270 PRINTS Expansin signature 115 125 IPR002963 GO:0009664
Lal9g0224 270 PRINTS Expansin signature 134 151 IPR002963 GO:0009664
Lal9g0224 270 PRINTS Expansin signature 151 164 IPR002963 GO:0009664
Lal9g0224 270 PRINTS Expansin signature 175 187 IPR002963 GO:0009664
Lal9g0224 270 PRINTS Expansin signature 187 208 IPR002963 GO:0009664
Lal9g0224 270 PRINTS Expansin signature 222 243 IPR002963 GO:0009664
Lal9g0224 270 PRINTS Expansin signature 251 267 IPR002963 GO:0009664
Lal9g0224 270 PRINTS Expansin/Lol pI family signature 43 58 IPR007118 GO:0005576
Lal9g0224 270 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576
Lal9g0224 270 PRINTS Expansin/Lol pI family signature 83 101 IPR007118 GO:0005576
Lal9g0224 270 PRINTS Expansin/Lol pI family signature 159 175 IPR007118 GO:0005576
Lal9g0224 270 PRINTS Expansin/Lol pI family signature 213 227 IPR007118 GO:0005576
Lal9g0224 270 PRINTS Expansin/Lol pI family signature 251 265 IPR007118 GO:0005576
Lal9g0224 270 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 62 176 IPR007112 -
Lal9g0224 270 SMART dpbb_1 79 166 IPR007112 -
Lal9g0224 270 SUPERFAMILY Barwin-like endoglucanases 43 194 IPR036908 -
Lal9g0224 270 Gene3D - 173 268 IPR036749 -
Lal9g0224 270 Pfam Expansin C-terminal domain 177 254 IPR007117 -
Lal9g0224 270 PANTHER EXPANSIN 15 269 - -
Lal9g0224 270 PANTHER EXPANSIN-A15 15 269 IPR002963 GO:0009664
Lal9g0224 270 Gene3D - 33 172 IPR036908 -
Lal9g0224 270 Pfam Lytic transglycolase 79 166 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0224 Lal-Chr9 1379058 1382124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0224 10 270 Expansin Gene Family AT2G39700 81.609 6.18e-162 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0224 - - gmx:100809139 501.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0224 9 1379058 1382124 Lal9g0224 9 1379058 1382124 ECH
Lal9g0224 9 1379058 1382124 Lal6g0282 6 1853604 1855918 ECH
Lal9g0224 9 1379058 1382124 Lal18g1325 18 15713540 15715012 ECH
Lal1g2180 1 23798884 23802473 Lal9g0224 9 1379058 1382124 ECH
Lal9g1593 9 18300590 18304522 Lal9g0224 9 1379058 1382124 ECH
Lal2g1842 2 20747588 20750373 Lal9g0224 9 1379058 1382124 ECH
Lal1g0322 1 1954767 1956562 Lal9g0224 9 1379058 1382124 LSH
Lal25g0141 25 886327 890321 Lal9g0224 9 1379058 1382124 PCT
Lal9g0224 9 1379058 1382124 Lal25g0141 25 886327 890321 PCT