Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0218 ATGAACAAAGATGCGCAATCCGAAACGCTGTCGTATTGGTGCTACAACTGCACCCGCTACGTTCACCTTGTGCACCACAACAACACCGCATGTCCTCACTGCGAAACCGGTTTCATTGAATGGATCCAACCCGATCCATCACCCAATCACCCTCTCACTCCTTTCCCCGACGACTCAACGTTGACCACACAAGAATTCCGCCGGAGACACCATAACGTCACCATCACCTCGCCGATCAACCCCGTCATCATTCTGCGCTCAAATGGAGACGACGGCGCCGACCACGACGGTAGCGTATTCGAATTGTACCACGACGACGGCAACGGTCTCCGTCCCTTGCCGCCTACTATGTCGGAGTTCTTGTTAGGAACTGGTTTCAATCGTTTGTTGCATCAGTTTTCCCAGGTCGAGATGAACGAGTTTGATAGGCTGGAGAATCCACCGGCGTCAAAGGCAGCGACCGATTTGATTCCGACGATCGAGATCGAAGAAACGCACTTATGTACCGATTCACACTGTGCGGTTTGCAAAGAAGCGTTCGAGCTTGGTTCCGAAGCGCGTGAATTACCGTGCAAGCATATTTACCACTCCGATTGCATTATTCCGTGGCTATCTTTGCGAAACTCATGTCCTGTGTGCCGCATCAAGCTTCCTTCGGCTCAGAACCCTCAAGTTTCCAGTCAAATCGAGGAAGAATCGATTGGGTTCACGATTTGGAGGCTGCCAGGCAGTGGATTTGCCATCGGTAGGTTTTCCGGTGGCCGGAGAACCAGCGAGAGCCATTTGCCGGCTGTTTACACCGAAATGGACGGTGCAATGAATAATACAAGTGGAACTTCGATCCGTATTTCACGAACACCGAGAAGGAATAGGGTTAGGGAAAGTGGTGTTGTTGGTAGGGCTTTTAGTAATTTCTTATCATGCTTTGGTTTTAGCTCTTCATCCGAGAGAAGAAGTCGTAGCAGGTCGAGTTCCCTATCCAATAGGAGGACATTTGTGATAGAAGTTTAA 1011 0.5005 MNKDAQSETLSYWCYNCTRYVHLVHHNNTACPHCETGFIEWIQPDPSPNHPLTPFPDDSTLTTQEFRRRHHNVTITSPINPVIILRSNGDDGADHDGSVFELYHDDGNGLRPLPPTMSEFLLGTGFNRLLHQFSQVEMNEFDRLENPPASKAATDLIPTIEIEETHLCTDSHCAVCKEAFELGSEARELPCKHIYHSDCIIPWLSLRNSCPVCRIKLPSAQNPQVSSQIEEESIGFTIWRLPGSGFAIGRFSGGRRTSESHLPAVYTEMDGAMNNTSGTSIRISRTPRRNRVRESGVVGRAFSNFLSCFGFSSSSERRSRSRSSSLSNRRTFVIEV 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0218 336 ProSiteProfiles Zinc finger RING-type profile. 173 214 IPR001841 -
Lal9g0218 336 CDD RING-H2_RNF126_like 173 214 - -
Lal9g0218 336 Pfam Protein of unknown function (DUF1117) 234 327 IPR010543 -
Lal9g0218 336 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC2A-RELATED 7 297 - -
Lal9g0218 336 SUPERFAMILY RING/U-box 157 220 - -
Lal9g0218 336 Pfam Ring finger domain 172 214 IPR001841 -
Lal9g0218 336 SMART ring_2 173 213 IPR001841 -
Lal9g0218 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 220 IPR013083 -
Lal9g0218 336 Pfam zinc-ribbon 11 40 IPR039525 GO:0061630
Lal9g0218 336 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 7 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0218 Lal-Chr9 1341125 1342135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0218 112 219 C3H Transcription Factor Family AT5G01980 41.667 3.21e-23 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0218 - - gmx:100804867 402.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0218 9 1341125 1342135 Lal9g0218 9 1341125 1342135 ECH
Lal2g0213 2 1253778 1254803 Lal9g0218 9 1341125 1342135 ECH
Lal2g0213 2 1253778 1254803 Lal9g0218 9 1341125 1342135 LSH
Lal25g0134 25 848074 850695 Lal9g0218 9 1341125 1342135 PCT
Lal9g0218 9 1341125 1342135 Lal25g0134 25 848074 850695 PCT