Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0205 ATGAGGAACCCTGAGGCCTCATCTGAAAGAAACAACAAGAACCTTAGAAAAGGGTTGTGGTCACCACAAGAAGATGAAAAGCTCATGAACTACATGTTAAAGAATGGACAAGGTTGTTGGAGTGATGTCGCTAGAAATGCTGGTCTTCAAAGATGTGGCAAAAGTTGTCGCCTTCGATGGATCAATTACTTAAGACCTGATCTTAAACGAGGCGCTTTCTCACCCCAAGAAGAGGAATTCATCATTCATTTGCATTCTCTCCTTGGAAACAGATGGTCTCAAATAGCTGCCCGATTACCTGGACGTACTGATAATGAAATTAAGAATTTTTGGAATTCAACAATTAAGAAAAGGCTCAAGAGTTTGTCCTCCTCAACCTCGCCAAACGAAAGCGAGTCCTCATTATATGTCGACCCTAACAACAAAGACCTCAATATTGGAGGGTTTACTTCTACTATGCAACATTATCGACATGCTGAATTTATGCCTATGTTCAATTCACCATCAATGCAAGCCACAGTTTTCAACTCCATAATTGAAAGTTTACCTATGATAGAGCATGGAATAAACATGCCAGTTGGTGGTGGATTTTTCAATGGTATAATTGACAACTCCGTAGAGAGTGTTAGCACTACTTCTGACCACAACCTCAAAGTGGAGAATGCATGCAACAACATAGATAATAACAATATTTACCTTAATAATTCCAATAATAAGATCAAAGATGGGGTGGAGAATTTATTTCAAGAAGAGTTAGCCATGGGAGACTGGGACTTGGAGGAGTATATGAAAGATGTTTCATCCTTTCCCCTTCTTGATTTTTCAAACTAG 831 0.3911 MRNPEASSERNNKNLRKGLWSPQEDEKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEEFIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKSLSSSTSPNESESSLYVDPNNKDLNIGGFTSTMQHYRHAEFMPMFNSPSMQATVFNSIIESLPMIEHGINMPVGGGFFNGIIDNSVESVSTTSDHNLKVENACNNIDNNNIYLNNSNNKIKDGVENLFQEELAMGDWDLEEYMKDVSSFPLLDFSN 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0205 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Lal9g0205 276 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Lal9g0205 276 CDD SANT 72 112 IPR001005 -
Lal9g0205 276 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Lal9g0205 276 Pfam Myb-like DNA-binding domain 70 113 IPR001005 -
Lal9g0205 276 Gene3D - 17 69 - -
Lal9g0205 276 SMART sant 16 66 IPR001005 -
Lal9g0205 276 SMART sant 69 117 IPR001005 -
Lal9g0205 276 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Lal9g0205 276 CDD SANT 20 64 IPR001005 -
Lal9g0205 276 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Lal9g0205 276 PANTHER MYB TRANSCRIPTION FACTOR 8 212 - -
Lal9g0205 276 PANTHER MYB TRANSCRIPTION FACTOR 209 275 - -
Lal9g0205 276 Gene3D - 71 137 - -
Lal9g0205 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Lal9g0205 276 PANTHER MYB DOMAIN PROTEIN 55 8 212 - -
Lal9g0205 276 PANTHER MYB DOMAIN PROTEIN 55 209 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0205 Lal-Chr9 1278278 1281142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0205 1 274 MYB Transcription Factor Family AT3G08500 43.567 6.12e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal9g0205 Myb_DNA-binding 1.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0205 K09422 - gmx:100786151 372.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0205 9 1278278 1281142 Lal9g0205 9 1278278 1281142 ECH
Lal1g0303 1 1836739 1840125 Lal9g0205 9 1278278 1281142 LSH
Lal8g0340 8 2305623 2307775 Lal9g0205 9 1278278 1281142 PCT
Lal9g0205 9 1278278 1281142 Lal8g0340 8 2305623 2307775 PCT