Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0200 ATGAGTTGGGGCCCACATATGGAGGTCCATTACAATAACATCAACTATCCCTATAATACTGCAGGGAGCTTTATTGAATATTTTGAAGGTCTTACCTATGAACATGTCAATTTCATTTTTTCTGGTACATCACATGCTCAGGAGAATTCTTACCCTTCAACTTCAAACTTTTACAAGTTTGGACTATCTGAACTTGACAGTAATTCATACTGTCGTTACAGTCATGGTGATGACTTAAGCCATCATCAATCACCCGTGGATGACTATAGGAGGCCTTTGGAAAACTCACCGATAGTTAGCGAACAAACAACAGTAGCGAATACAGAATGGGGAGAAAGTATAAACTCTGACACACGAGACAATTCTATTGAATGTCCACGAAGACACTATAGTAGTTCCAATGATTATCAGGTCATTTGGCAAGACAATATTGATCCTGATGACATGACTTATGAGGAACTACTTGAATTAAGTGAGGCTGTCGGAACTCAAAGCCGTGGTCTCACCCAAGAACAGATTTCCTTGCTTCCAGTTTCAAGGTACAAGTGTGGATTCTTCTTGAGGAAAAAGTCAAGGGATGAGAGATGTGTTATTTGCCAAATGGAATATAGAAGAGGGGACAAGCGGATCACTTTGCCATGTAAGCACATGTACCACGCTAGTTGCGGGAACAAATGGCTTAGCATCAACAAGGCAAGATATTCATCAATTTGCTTGTCCAATATGTTACACAGAGGTGTTTGCAGACAAGTCAAAACACGAATAATCACAAAAGAGCGAATAGAAGCAACCTGCAATCTTTGCATGTTTCTGTTTGTTTCTCCTTGA 828 0.3998 MSWGPHMEVHYNNINYPYNTAGSFIEYFEGLTYEHVNFIFSGTSHAQENSYPSTSNFYKFGLSELDSNSYCRYSHGDDLSHHQSPVDDYRRPLENSPIVSEQTTVANTEWGESINSDTRDNSIECPRRHYSSSNDYQVIWQDNIDPDDMTYEELLELSEAVGTQSRGLTQEQISLLPVSRYKCGFFLRKKSRDERCVICQMEYRRGDKRITLPCKHMYHASCGNKWLSINKARYSSICLSNMLHRGVCRQVKTRIITKERIEATCNLCMFLFVSP 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0200 275 Pfam Ring finger domain 195 232 IPR001841 -
Lal9g0200 275 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 241 IPR033276 GO:0004842|GO:0016567|GO:0046621
Lal9g0200 275 ProSiteProfiles Zinc finger RING-type profile. 196 238 IPR001841 -
Lal9g0200 275 SUPERFAMILY RING/U-box 192 233 - -
Lal9g0200 275 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 241 - -
Lal9g0200 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 269 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0200 Lal-Chr9 1256627 1261193 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0200 5 232 C3H Transcription Factor Family AT3G63530 40.693 5.18e-53 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0200 K19045 - gmx:100793907 416.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0200 9 1256627 1261193 Lal9g0200 9 1256627 1261193 ECH
Lal2g0197 2 1172320 1177759 Lal9g0200 9 1256627 1261193 ECH
Lal2g0197 2 1172320 1177759 Lal9g0200 9 1256627 1261193 LSH