Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0198 ATGATTCATATCCGATGCGATTCTAAGCTTATTGATCGACGTCAACTGGAGTTGGAATTTTTTTATAATGCAAACTGCATGAAAGTTGGAAAAAAAATGGACCATGACAAGACTGGATGCCAAGCTCCCCCTGAAGGTCCTATATTGTGCATTAACAACTGTGGATTTTTTGGAAGTGCAGCTACCATGAACATGTGTTCTAAGTGCCACAAAGACATGATGCTCAAAGAGGAGCAGGCCAAGCTTGCAGCTTCATCCTTTGGTAATATTATGAATGGGTCATCAAGCAGCACTACAATTGAATCTGTTGCTGCCAAGGTGGATGTCCCGGTAAATGCAGTGGAGCCTAAACCTATCTCTGTTCAACCTTTATTTGCTTCCGGTTCAGAGGAGAGTGGTGAGTCAAAGCCAAAGGACGGTCCAAAGCGTTGCCTTAGCTGCAATAAACGGGTTGGTTTGACAGGGTTTAATTGTCGATGTGGCAACCTTTTCTGTGCTGTACATCGCTACTCAAACAAGCATGATTGTCCATTCGATTATCATGCTGCTGGACGGGATGCCATAGCTAAAGCAAACCCGGTTATCAAGGCTGAGAAGCTTGACAAGATATAG 612 0.4379 MIHIRCDSKLIDRRQLELEFFYNANCMKVGKKMDHDKTGCQAPPEGPILCINNCGFFGSAATMNMCSKCHKDMMLKEEQAKLAASSFGNIMNGSSSSTTIESVAAKVDVPVNAVEPKPISVQPLFASGSEESGESKPKDGPKRCLSCNKRVGLTGFNCRCGNLFCAVHRYSNKHDCPFDYHAAGRDAIAKANPVIKAEKLDKI 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0198 203 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 49 86 - -
Lal9g0198 203 Pfam A20-like zinc finger 48 71 IPR002653 GO:0003677|GO:0008270
Lal9g0198 203 PANTHER ZINC FINGER AN1 DOMAIN STRESS-ASSOCIATED PROTEIN 33 203 - -
Lal9g0198 203 SMART A20_3 47 71 IPR002653 GO:0003677|GO:0008270
Lal9g0198 203 Pfam AN1-like Zinc finger 146 180 IPR000058 GO:0008270
Lal9g0198 203 Gene3D - 33 100 - -
Lal9g0198 203 PANTHER AN1-TYPE ZINC FINGER PROTEIN 33 203 - -
Lal9g0198 203 SMART AN1_Zf_4 144 181 IPR000058 GO:0008270
Lal9g0198 203 Gene3D - 125 199 IPR035896 -
Lal9g0198 203 ProSiteProfiles Zinc finger A20-type profile. 44 78 IPR002653 GO:0003677|GO:0008270
Lal9g0198 203 ProSiteProfiles Zinc finger AN1-type profile. 138 184 IPR000058 GO:0008270
Lal9g0198 203 SUPERFAMILY AN1-like Zinc finger 128 198 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0198 Lal-Chr9 1248082 1250154 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0198 40 203 C2H2 Transcription Factor Family AT3G52800 40.113 4.03e-37 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0198 - - gmx:100500070 300.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0198 9 1248082 1250154 Lal9g0198 9 1248082 1250154 ECH
Lal2g0195 2 1161307 1163427 Lal9g0198 9 1248082 1250154 ECH
Lal20g0241 20 1708095 1711427 Lal9g0198 9 1248082 1250154 ECH
Lal1g1703 1 19482788 19483306 Lal9g0198 9 1248082 1250154 ECH
Lal2g0195 2 1161307 1163427 Lal9g0198 9 1248082 1250154 LSH