Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0197 ATGAATTCAAACAACTGGCTTTCCTTCCCTCTTTCTCCTACTCATTCTTCATTACCACCTCATGATCTTCAAGCAACTCAATATCATCATTTTTCTCTTGGGTTAGTGAATGAGAACATGGAAAATCCTTTCCAAAATCACGATTGGAATCTTATTAATACTCAAACCAATGATGAAGTTCCAAAGGTTGCAGATTTTCTGGGTGTGAGCAGGTCTGAAAATCAGTCAGATCTTGCTGCCATGAATGAAATTCAGCCAAATGAATCAGAATACCTTTTCACAAATAACAGTCTCGTCCCCATGCAAAACACAGTGGTGACAACATCTAGCAACTATGAGTATCAAGAATGTGCCAATAGTAATTTGCAATCATTGACATTATCAATGGGAAGTGGTAAGGACTTAAGTTCTGAAACTAGTGGTGATAATAGTACAAAGACTGTTGAAGAAGCTGCACCTTCTAGAAGAACTTTGGATACCTTTGGGCAGAGAACATCCATATATCGTGGTGTAACAAGACATAGATGGACAGGAAGATATGAAGCTCACCTATGGGACAATAGCTGTAGAAGGGAAGGACAATCAAGGAAAGGTCGTCAAGGTGGATATGACAAAGAAGAGAAAGCAGCTAGGTCTTACGATTTAGCTGCACTTAAGTACTGGGGAACATCCACCACTACTAATTTTCCAATCAGTAACTATGAGAAGGAAATTGATGAAATGAAGCACATGACAAGACAAGAATTTGTGGCCTCTATTAGAAGGAAGAGCAGTGGTTTCTCAAGGGGTGCATCAATGTATCGTGGAGTTACAAGGCATCACCAACATGGGAGATGGCAAGCAAGAATTGGAAGAGTTGCGGGAAACAAAGATCTTTACTTGGGAACTTTCAGTACTGAGGAAGAAGCTGCAGAAGCTTATGACATAGCTGCAATAAAGTTCAGAGGTCTTAACGCGGTAACTAACTTTGACATGAATCGTTATGATGTGAAAGCCATTCTTGAAAGCAACACTCTCCCAATCGGTGGTGGTGCTGCTAAACGACTAAAAGAAGCTCAAGCTCTAGAATCTTCAAGGAAACGTGATCAAGAAATGATTGCACTTGGATCAAACTTTCAATATGGAACCTCAAGCTCTAGCAGCAGCCTACAACCTTATCCTCTAATGCAGCATTTTGAACAATCTCAACCATTGCTAACCCTACAAAACCATGACATGTCTCACTTCTCTCAAGATCCTTCTACACTACATCAGAGTTACCTCCAAACACAGCTTCAGTTGCACCAGCAAAGTAACTCTTCTTACATTCACCAATCAGTTCAGAATGCTCAATTCTATAACATTTATGTTCAGAACCATCACCCAGCATTGCTTCATGGAATGATGAACATGGGTTCTTCTTCATCATCATCTTTGATGGAGAATGATAATAACACTATTGGTGGTTTCACTGGGAATGTTAATGCTGTGGGATCAGCACAAGAGCTTGGGTTGGTTAAGGTTGACTATGACATTGACATGTCTTCCGGAAGTTACGGCGGCTGGTCGGCAGAGGGGACGGAGTCCATGCAGGCATCAACAACTGGTGGCGGTGGCGGTGGCGGCGGCGGCGTATTTAACATGTGGAGTGAATGA 1635 0.4165 MNSNNWLSFPLSPTHSSLPPHDLQATQYHHFSLGLVNENMENPFQNHDWNLINTQTNDEVPKVADFLGVSRSENQSDLAAMNEIQPNESEYLFTNNSLVPMQNTVVTTSSNYEYQECANSNLQSLTLSMGSGKDLSSETSGDNSTKTVEEAAPSRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARSYDLAALKYWGTSTTTNFPISNYEKEIDEMKHMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMNRYDVKAILESNTLPIGGGAAKRLKEAQALESSRKRDQEMIALGSNFQYGTSSSSSSLQPYPLMQHFEQSQPLLTLQNHDMSHFSQDPSTLHQSYLQTQLQLHQQSNSSYIHQSVQNAQFYNIYVQNHHPALLHGMMNMGSSSSSSLMENDNNTIGGFTGNVNAVGSAQELGLVKVDYDIDMSSGSYGGWSAEGTESMQASTTGGGGGGGGGVFNMWSE 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0197 544 PRINTS Ethylene responsive element binding protein signature 168 179 IPR001471 GO:0003700|GO:0006355
Lal9g0197 544 PRINTS Ethylene responsive element binding protein signature 306 326 IPR001471 GO:0003700|GO:0006355
Lal9g0197 544 CDD AP2 265 324 IPR001471 GO:0003700|GO:0006355
Lal9g0197 544 SUPERFAMILY DNA-binding domain 265 325 IPR016177 GO:0003677
Lal9g0197 544 SMART rav1_2 266 330 IPR001471 GO:0003700|GO:0006355
Lal9g0197 544 SMART rav1_2 167 236 IPR001471 GO:0003700|GO:0006355
Lal9g0197 544 MobiDBLite consensus disorder prediction 129 151 - -
Lal9g0197 544 CDD AP2 166 232 IPR001471 GO:0003700|GO:0006355
Lal9g0197 544 SUPERFAMILY DNA-binding domain 166 232 IPR016177 GO:0003677
Lal9g0197 544 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 543 - -
Lal9g0197 544 Pfam AP2 domain 267 316 IPR001471 GO:0003700|GO:0006355
Lal9g0197 544 Pfam AP2 domain 167 222 IPR001471 GO:0003700|GO:0006355
Lal9g0197 544 ProSiteProfiles AP2/ERF domain profile. 266 324 IPR001471 GO:0003700|GO:0006355
Lal9g0197 544 MobiDBLite consensus disorder prediction 129 154 - -
Lal9g0197 544 Gene3D AP2/ERF domain 266 326 IPR036955 GO:0003700|GO:0006355
Lal9g0197 544 Gene3D AP2/ERF domain 167 232 IPR036955 GO:0003700|GO:0006355
Lal9g0197 544 ProSiteProfiles AP2/ERF domain profile. 167 230 IPR001471 GO:0003700|GO:0006355
Lal9g0197 544 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 4 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0197 Lal-Chr9 1237157 1240579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0197 1 544 AP2-EREBP Transcription Factor Family AT1G51190 64.262 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lal9g0197 AP2 1.5e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0197 K09285 - gmx:100170752 799.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0197 9 1237157 1240579 Lal9g0197 9 1237157 1240579 ECH
Lal1g0297 1 1774425 1778406 Lal9g0197 9 1237157 1240579 LSH