Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0194 ATGGAGTCAGATCTTGGGCAGCACCCTCCCATGTTCTTGGATCAGCAACAGCAAATTAGTTCAGGCTTGACGCGATACCGGTCAGCTCCAAGTTCCTATTTTTTGAATATAATTGACGAGGAGTTCTATGAGAGCACATTCAATAGCCCCTCTAGCCCTGAAACAGAGCGAGTTTTCGATCGGTTCATGAATAATCTTAGTGGTAGTGATGGTGGTGCAGAGGATTCTGTTTCTCAGAATATCCAACCTGGTCAGCAAGTCTCAGCAGTGAAGGAAGAAATCATTAATCAACAGTCTCATGATGTGCCTTCTATGAATAATGAAAAAGTGATTCTTCAGCAGCAGCAACAGCAGCAAAGGAATATGAATAATTATGGATCCTCCACTCCTCAAAAAATATACCAAGGTTCTGGACGACCACCTTTGCCAAACCATATGAAGACTGGTCGTGGAAGTACTTCTAATCTTATCAGACATGGTAGCTCCCCTGCTGGACTGTTTTCAACCATAAACATTGAAGGCTATGCTGCTATAAGAGGCATGGGAACCTTGGGAACTGCTAGTTGCACCGGTGAGAATGCAAATTTTTCTCCAGCGGTGAGGTTGAAGAATGCACCGAATTACTCGTCAGGGATAATGTCATCAAAAGCTGAAATCGGAAATGAAAGCAATGAACAAAACAGACAAGTTAGAGAAGGTTTTGCTGAAAGCCGGGGTATTGATGTCATCCCAGCTTTCCCCGTAAGTCCTTGGGGTGAATCTTCAATCATGCCCGACAATATAGGTGATGTAAAAAGACCTAGAGATAATGATGATGAGGTAAAACCATTTTCCGGTTTAAATGCAGCTGAAACACAGAATGAAACAGGAGGCCAACCTTCAATTCCTTTGGCTCACCAGTTGAGTATGCCAAATACTCAAATGGAAATGACTGCCATTGAGAAGTTTCTGCAGTCTTCTGATTCTGTCCCGTGGAAGATTCGCGCCAAGCGGGGCTGTGCCACTCATCCAAGAAGCATAGCAGAGAGGGTTAGAAGAACTAAAATTAGTGAGCGAATGAAGAAACTACAAGATCTGGTCCCCACCATGGACAATCAAACAAAGACAGCAGACATGTTGGACCTAGCTGTTGAGTACATTAAACATCTTCAAAAACAAGTTCAGACTCTTTCAGAAAGTCAAGCTAAGTGTACATGTTCACACAAGCAACAACAATAA 1218 0.4294 MESDLGQHPPMFLDQQQQISSGLTRYRSAPSSYFLNIIDEEFYESTFNSPSSPETERVFDRFMNNLSGSDGGAEDSVSQNIQPGQQVSAVKEEIINQQSHDVPSMNNEKVILQQQQQQQRNMNNYGSSTPQKIYQGSGRPPLPNHMKTGRGSTSNLIRHGSSPAGLFSTINIEGYAAIRGMGTLGTASCTGENANFSPAVRLKNAPNYSSGIMSSKAEIGNESNEQNRQVREGFAESRGIDVIPAFPVSPWGESSIMPDNIGDVKRPRDNDDEVKPFSGLNAAETQNETGGQPSIPLAHQLSMPNTQMEMTAIEKFLQSSDSVPWKIRAKRGCATHPRSIAERVRRTKISERMKKLQDLVPTMDNQTKTADMLDLAVEYIKHLQKQVQTLSESQAKCTCSHKQQQ 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0194 405 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 14 402 - -
Lal9g0194 405 SMART finulus 339 389 IPR011598 GO:0046983
Lal9g0194 405 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 333 383 IPR011598 GO:0046983
Lal9g0194 405 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 14 402 - -
Lal9g0194 405 Pfam Helix-loop-helix DNA-binding domain 338 384 IPR011598 GO:0046983
Lal9g0194 405 Gene3D - 334 405 IPR036638 GO:0046983
Lal9g0194 405 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 336 396 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0194 Lal-Chr9 1220491 1224278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0194 1 400 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 37.209 2.98e-64 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal9g0194 HLH 5.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0194 - - gmx:100803833 536.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0194 9 1220491 1224278 Lal9g0194 9 1220491 1224278 ECH
Lal2g0191 2 1142906 1146608 Lal9g0194 9 1220491 1224278 ECH
Lal2g0191 2 1142906 1146608 Lal9g0194 9 1220491 1224278 LSH