Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0192 ATGTCCACAACCACCGCTCCATGCGGCGACTCTGTCTCCACGCTTGAAACTCCAACGCTGGACACAGAGTCTCATGAGCTCCTCCACTCCATTTCCGAGCACGGCGGTTACGCCTACGTCAGCATGGCGGCGATGGCAGCCGTCGGAGATTTCTGCGCTGCTGAAGCCGCAAGAGAGATGGCGTGGGAGCAGCTGCACTCGGGGCCGTGGCACTCGGTGCTGCCAGTGTGGCGCGACGCGTACTCAATGGCGTGCCTCCACGTGGCGAAGCATCACTTTGAGAACGGAGAGTTCGAAAAATCGCTTAGGGTTTTGGACATGGGGATCATTATGGGAGGGACGCTCCTCGGAAAGGATCTGCACTATGCTGTTCATAAGGTTTCTGAAAAAGCGAGGAGCGTTAGGGTTTCTGAGGGAAGATGTGAAGATTTGGAGAACTCCGAGAATCGACTCGTTGATCAAGAATTTGATGTTTCTAAGGTGTTCCAACTTTTACCTGTCAAGTCTCTTACTTCTAAGATTGTGGTGAAGAGGTCCGCACTGTCATTGGAGGGGTTCCTGAAAGATCATTTCCTGTCCTGCTGTCCGGTTATAATCAGTGATTGTATGGCTCACTGGCCGGCCAAAATGAAATGGAATAATATAGATTACTTGCAAAGAGTTGCTGGTGACCGCACCATTCCAGTTGAGGAAGGCACCGCTTCTTCTTTGAAGAGCAAAGGTAATCCATACACAAATACACAGAGGAAGGGAGAAGAGGGTGAAAAGGTTAACTGGAACTTTTTTTGCCAGGTTGGGAAGAACTATTTATGTGCAGAGTGGAAGCAAGAGCTAATTACGTTTTCAGAGTTTCTTCAGCGGATAAGGTCAAATGGCTGTTCTCCTGGTGGTCCTACATATCTTGCTCAACATCCATTATTTGATCAGATAAATGAGCTTCGGAGAGATATCTTTATTCCTGACTATTGTTTTACTGGTGGGGGGGAGCTAAGGTCTCTTAATGCTTGGTTTGGTCCAGCTGGAACGGTAACCCCATTACACCATGATCCACATCATAACATACTGGCTCAGGTTGTTGGGAAAAAATACATTAGGCTTTACTCTGCATCTTTTTCCGAGGAACTTTTCCCCTACCCTGATACCATGCTTTGCAATTCCAGCCAGGTTGACTTGGATGACATAGATGAAAGGAAGTTTCCTAAGGTGCAAGACCTGGAATTTGTAGACTGTATTTTAGAGGAAGGTGAAATGTTATATGTCCCACCAAAATGGTGGCACTATGTGCGCTCTTTAACTACCAGTTGCTCAGTTAGCTTTTGGTGGAGTGAGGGTGAAAGTTCAGATGCATATTAA 1353 0.4723 MSTTTAPCGDSVSTLETPTLDTESHELLHSISEHGGYAYVSMAAMAAVGDFCAAEAAREMAWEQLHSGPWHSVLPVWRDAYSMACLHVAKHHFENGEFEKSLRVLDMGIIMGGTLLGKDLHYAVHKVSEKARSVRVSEGRCEDLENSENRLVDQEFDVSKVFQLLPVKSLTSKIVVKRSALSLEGFLKDHFLSCCPVIISDCMAHWPAKMKWNNIDYLQRVAGDRTIPVEEGTASSLKSKGNPYTNTQRKGEEGEKVNWNFFCQVGKNYLCAEWKQELITFSEFLQRIRSNGCSPGGPTYLAQHPLFDQINELRRDIFIPDYCFTGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYSASFSEELFPYPDTMLCNSSQVDLDDIDERKFPKVQDLEFVDCILEEGEMLYVPPKWWHYVRSLTTSCSVSFWWSEGESSDAY 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0192 450 SUPERFAMILY Clavaminate synthase-like 179 442 - -
Lal9g0192 450 SMART cupin_9 299 449 IPR003347 -
Lal9g0192 450 MobiDBLite consensus disorder prediction 232 251 - -
Lal9g0192 450 MobiDBLite consensus disorder prediction 232 248 - -
Lal9g0192 450 Pfam Cupin-like domain 186 443 IPR041667 -
Lal9g0192 450 ProSiteProfiles JmjC domain profile. 293 450 IPR003347 -
Lal9g0192 450 Gene3D Cupin 174 442 - -
Lal9g0192 450 PANTHER - 37 233 - -
Lal9g0192 450 PANTHER - 263 443 - -
Lal9g0192 450 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 37 233 - -
Lal9g0192 450 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 263 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0192 Lal-Chr9 1209500 1214346 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lal9g0192 Cupin_8 8.5e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0192 K24444 - gmx:100813075 672.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0192 9 1209500 1214346 Lal9g0192 9 1209500 1214346 ECH
Lal1g0294 1 1744629 1750557 Lal9g0192 9 1209500 1214346 LSH