Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0186 ATGGATTCCTATAATGAAGACTTCTACAGAGACGATACTCCTATGGATTACTACAGTGACTACGATGATGACGCTGCCGATGATTACTTTGACGATACCGACCGAATTCTCTCTCGTCGCCCTCAGCAAAATTTTACCATATTGAAGGAATCAGATATACGGCAAAGACAGGACGAGGACATCAATAGAGTTGCAACGGTTCTTTCCATATCAGAAGTTTCTGCAAGCATACTACTTCGTCACTACAACTGGAGTGTCAGTAAAGTGCATGATGCATGGTTTGCTGATGAAGATTCTGTGCGAAAAGCAGTTGGCTTGTTGGAGCAGCCAGTTGTCCAGTGTCCTAATGATGAAGAGCTTACTTGCGGCATCTGTTTCGAAAATTATGCTCGTGCTAAGATTGAAATGGCTTCTTGTGGACATCCCTACTGTATCTCATGCTGGGCAGGATACATTGGCACATCCATTAATGACGGTCCTGGATGTTTGATGCTGAGATGTCCTGATCCGACTTGTGATACTGCTGTTGGTCAAGATATTATTAATATTGTAGCATCTGATGAAGATAAACGCAAGTATGGTCATTACCTTCTTAGGTCTTATATTGAGGACAATAAGAAGTCCAAGTGGTGTCCCGCTCCAGGTTGTGAATATGCAGTTACTTTTGATGCTGGTAGTGGAAATTATGATGTTTCTTGCCTCTGTTCATATTGCTTTTGTTGGAATTGCACTGAGGAGGCTCACCGTCCAGTGGACTGTGGCACTGTGGCAAAGTGGATTTTGAAGAACAGTGCAGAGTCTGAAAATATGAACTGGATACTTGCTAACTCAAAGCCATGTCCCAAGTGCAAGCGACCTATTGAAAAAAACCAAGGGTGCATGCACATAACATGCACTCCACCATGTAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGAACTGGTGGTTTCTATGCTTGCAATCGTTATGAATCAGCTAAGCAAGAGGGAGTGTACGATGATTCTGAAAAAAGAAGAGATATGGCAAAGAATTCACTGGAGCGGTACACACATTATTATGAGCGCTGGGCCAGCAATCAATCTTCAAGGCAAAAAGCTCTTGATGATCTACATCAGATGCAAACTGTTCATATTGAGAAGCTTAGTGACAAACAGTGCCAGCCTGAGTCACAGCTTAAGTTCATAACTGAAGCCTGGCTACAGATAGTCGAGTGTAGGCGAGTGCTGAAATGGACGTATGCATATGGTTACTATTTACCGGAGCATGAACATGCAAAAAAACAGTTCTTTGAGTACTTACAAGGTGAAGCAGAGTCTGGTCTGGAGAGACTTCATCAATGTGCTGAAAAGGAATTACATCCATTTATCAATGCTGATGGCCCATCTAGAGAATTTAATGACTTTCGTACAAAGCTAGCCGGATTGACTAGTGTGACTAAAAATTACTTTGAGAATTTAGTTAGAGCATTAGAGAATGGTCTATCAGATGTGGATAGTAATGGAGCTGCCTCCAGAAAAGCTACAAGCTCAAAAAATGCTGCAAGGAGCAGCAAGGGGAGAGGTGGAAGAGGAAAGGGAACTTTGCGAAGCAGCATGTCCAGCAGAATGTCTGATGATAATCATTGGTTTTGCGAGCAATGTACCTATGCAAATGTTGAATCTGCCACTGCATGTCAGATTTGCAATTATCAGCGTCAATGA 1722 0.4245 MDSYNEDFYRDDTPMDYYSDYDDDAADDYFDDTDRILSRRPQQNFTILKESDIRQRQDEDINRVATVLSISEVSASILLRHYNWSVSKVHDAWFADEDSVRKAVGLLEQPVVQCPNDEELTCGICFENYARAKIEMASCGHPYCISCWAGYIGTSINDGPGCLMLRCPDPTCDTAVGQDIINIVASDEDKRKYGHYLLRSYIEDNKKSKWCPAPGCEYAVTFDAGSGNYDVSCLCSYCFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYESAKQEGVYDDSEKRRDMAKNSLERYTHYYERWASNQSSRQKALDDLHQMQTVHIEKLSDKQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELHPFINADGPSREFNDFRTKLAGLTSVTKNYFENLVRALENGLSDVDSNGAASRKATSSKNAARSSKGRGGRGKGTLRSSMSSRMSDDNHWFCEQCTYANVESATACQICNYQRQ 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0186 573 Pfam IBR domain, a half RING-finger domain 270 318 IPR002867 -
Lal9g0186 573 Pfam IBR domain, a half RING-finger domain 192 253 IPR002867 -
Lal9g0186 573 MobiDBLite consensus disorder prediction 505 523 - -
Lal9g0186 573 Pfam Ariadne domain 340 502 IPR045840 -
Lal9g0186 573 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 9 521 IPR031127 GO:0004842|GO:0016567
Lal9g0186 573 MobiDBLite consensus disorder prediction 505 543 - -
Lal9g0186 573 SUPERFAMILY RING/U-box 116 203 - -
Lal9g0186 573 SMART ibrneu5 191 253 IPR002867 -
Lal9g0186 573 SMART ibrneu5 257 327 IPR002867 -
Lal9g0186 573 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 205 IPR013083 -
Lal9g0186 573 ProSitePatterns Zinc finger RanBP2-type signature. 549 568 IPR001876 -
Lal9g0186 573 SUPERFAMILY RING/U-box 192 260 - -
Lal9g0186 573 ProSiteProfiles Zinc finger RanBP2 type profile. 545 573 IPR001876 -
Lal9g0186 573 ProSiteProfiles Zinc finger RING-type profile. 122 166 IPR001841 -
Lal9g0186 573 Gene3D - 249 504 - -
Lal9g0186 573 Coils Coil 570 573 - -
Lal9g0186 573 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 9 521 - -
Lal9g0186 573 SUPERFAMILY RING/U-box 272 320 - -
Lal9g0186 573 ProSiteProfiles TRIAD supradomain profile. 118 331 IPR044066 -
Lal9g0186 573 SUPERFAMILY Ran binding protein zinc finger-like 545 572 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0186 Lal-Chr9 1154214 1160587 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0186 5 572 ARIADNE family AT1G65430 69.391 0.0 832
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0186 K11968 - gmx:100784195 1013.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0289 1 1713368 1719496 Lal9g0186 9 1154214 1160587 LSH
Lal2g0183 2 1076480 1082755 Lal9g0186 9 1154214 1160587 LSH
Lal25g0376 25 2509417 2521006 Lal9g0186 9 1154214 1160587 PCT
Lal10g1061 10 17628152 17636128 Lal9g0186 9 1154214 1160587 PCT
Lal8g0315 8 2111474 2118469 Lal9g0186 9 1154214 1160587 PCT
Lal9g0186 9 1154214 1160587 Lal25g0376 25 2509417 2521006 PCT
Lal9g0186 9 1154214 1160587 Lal10g1061 10 17628152 17636128 PCT
Lal9g0186 9 1154214 1160587 Lal8g0315 8 2111474 2118469 PCT